FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0023527 through 18771 annotations produced 1 hits

(CG3071):

Annotation Number : CG3071
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023527
Gbrowse : chrX:2156874-2158854 (+) // 100.0 //
Probeset : 1637494_at
Accessions : protein= NP_569993;, nucleotide= NM_130637;
Pathway : Golgi to ER // inferred from sequence or structural similarity"
Interpro : 0005730 // nucleolus // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from sequence o
FlyMine data for FBgn0023527.
Homophila reports that CG3071 is a close match (2e-11) to human gene LIS1;PAFAH1B1 (NP_000421), a gene associated with Lissencephaly-1, 607432 (3);Subcortical laminar heterotopia (3).
BioGrid reports that CG3071 interacts with CG5547 CG32156 CG32369 .
VDRC has 3 RNAi stocks for FBgn0023527 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	160 ± 4	4 of 4	0.60	Down
Head	95 ± 5	4 of 4	0.40	Down
Eye	97 ± 5	4 of 4	0.38	Down
Thoracicoabdominal ganglion	198 ± 6	4 of 4	0.80	Down
Salivary gland	86 ± 8	4 of 4	0.34	Down
Crop	84 ± 4	4 of 4	0.30	Down
Midgut	84 ± 1	4 of 4	0.30	Down
Tubule	94 ± 9	4 of 4	0.40	Down
Hindgut	78 ± 5	4 of 4	0.30	Down
Heart	136 ± 5	4 of 4	0.53	Down
Fat body	146 ± 17	4 of 4	0.57	Down
Ovary	491 ± 8	4 of 4	1.90	Up
Testis	20 ± 1	4 of 4	0.10	Down
Male accessory glands	147 ± 4	4 of 4	0.60	Down
Virgin spermatheca	123 ± 9	4 of 4	0.48	Down
Mated spermatheca	210 ± 6	4 of 4	0.82	Down
Adult carcass	93 ± 10	4 of 4	0.40	Down
Larval CNS	236 ± 13	4 of 4	0.92	Down
Larval Salivary gland	94 ± 3	4 of 4	0.37	Down
Larval midgut	63 ± 10	4 of 4	0.25	Down
Larval tubule	61 ± 2	4 of 4	0.20	Down
Larval hindgut	130 ± 20	4 of 4	0.50	Down
Larval fat body	60 ± 4	4 of 4	0.20	Down
Larval trachea	243 ± 38	4 of 4	0.94	None
Larval carcass	166 ± 34	4 of 4	0.65	None
S2 cells (growing)	178 ± 1	4 of 4	0.69	Down
Whole fly	257 ± 4	4 of 4

Looking for FBgn0023527. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720