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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023528 through 18771 annotations produced 1 hits



(CG2924):

Annotation Number : CG2924
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023528
Gbrowse : chrX:2159442-2164789 (-) // 99.55 //
Probeset : 1637905_s_at
Accessions : protein= NP_569994; /// NP_726805;, nucleotide= NM_130638; /// NM_166935;
Interpro : 0004842 // ubiquitin-protein ligase activity // non-traceable author statement /// 0004842 // ubiquitin-protein ligase a
FlyMine data for FBgn0023528.
BDGP gene expression has embryonic in situ data for EG:25E8.2: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0023528 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain233 ± 184 of 4 1.00None
Head97 ± 104 of 4 0.40Down
Eye96 ± 64 of 4 0.42Down
Thoracicoabdominal ganglion173 ± 114 of 4 0.80None
Salivary gland125 ± 64 of 4 0.55Down
Crop133 ± 34 of 4 0.60Down
Midgut125 ± 64 of 4 0.50Down
Tubule51 ± 04 of 4 0.20Down
Hindgut126 ± 24 of 4 0.60Down
Heart62 ± 44 of 4 0.27Down
Fat body69 ± 84 of 4 0.30Down
Ovary651 ± 104 of 4 2.90Up
Testis26 ± 24 of 4 0.10Down
Male accessory glands74 ± 44 of 4 0.30Down
Virgin spermatheca35 ± 14 of 4 0.16Down
Mated spermatheca43 ± 24 of 4 0.19Down
Adult carcass72 ± 64 of 4 0.30Down
Larval CNS170 ± 54 of 4 0.74None
Larval Salivary gland84 ± 34 of 4 0.37Down
Larval midgut69 ± 44 of 4 0.30Down
Larval tubule186 ± 104 of 4 0.80None
Larval hindgut103 ± 44 of 4 0.45Down
Larval fat body91 ± 44 of 4 0.40Down
Larval trachea113 ± 44 of 4 0.50Down
Larval carcass105 ± 194 of 4 0.46Down
S2 cells (growing)124 ± 34 of 4 0.54Down
Whole fly228 ± 214 of 4

Looking for FBgn0023528. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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