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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023529 through 18771 annotations produced 1 hits



(CG2918):

Annotation Number : CG2918
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023529
Gbrowse : chrX:2165303-2169111 (-) // 99.88 //
Probeset : 1628194_at
Accessions : protein= NP_001162645; /// NP_569995;, nucleotide= NM_001169174; /// NM_130639;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electro
FlyMine data for FBgn0023529.
BDGP gene expression has embryonic in situ data for EG:25E8.1: 25 pix of staining in 23 body parts.
VDRC has 1 RNAi stocks for FBgn0023529 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain531 214 of 4 1.50Up
Head370 214 of 4 1.10None
Eye253 104 of 4 0.72Down
Thoracicoabdominal ganglion440 194 of 4 1.30Up
Salivary gland1296 544 of 4 3.69Up
Crop245 54 of 4 0.70Down
Midgut307 224 of 4 0.90None
Tubule195 224 of 4 0.60Down
Hindgut231 64 of 4 0.70Down
Heart573 214 of 4 1.63Up
Fat body582 654 of 4 1.66Up
Ovary420 114 of 4 1.20Up
Testis132 84 of 4 0.40Down
Male accessory glands3135 1814 of 4 8.90Up
Virgin spermatheca592 334 of 4 1.69Up
Mated spermatheca632 634 of 4 1.80Up
Adult carcass325 124 of 4 0.90None
Larval CNS474 424 of 4 1.35Up
Larval Salivary gland1243 754 of 4 3.53Up
Larval midgut242 124 of 4 0.69Down
Larval tubule310 124 of 4 0.90None
Larval hindgut328 254 of 4 0.93None
Larval fat body251 614 of 4 0.70None
Larval trachea597 884 of 4 1.70Up
Larval carcass470 524 of 4 1.34None
S2 cells (growing)884 234 of 4 2.51Up
Whole fly351 214 of 4

Looking for FBgn0023529. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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