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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0023530 through 18771 annotations produced 1 hits


Annotation Number : CG3740
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023530
Gbrowse : chrX:1562032-1563312 (-) // 100.0 //
Probeset : 1624552_at
Accessions : protein= NP_569932;, nucleotide= NM_130576;
FlyMine data for FBgn0023530.
BDGP gene expression has embryonic in situ data for EG:171E4.4: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0023530 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 34 of 4 1.30None
Head23 43 of 4 1.00None
Eye18 34 of 4 0.82None
Thoracicoabdominal ganglion34 53 of 4 1.50None
Salivary gland34 73 of 4 1.49None
Crop35 34 of 4 1.50Up
Midgut37 34 of 4 1.70Up
Tubule28 23 of 4 1.30Up
Hindgut36 03 of 4 1.60Up
Heart21 22 of 4 0.95None
Fat body36 44 of 4 1.59Up
Ovary26 54 of 4 1.20None
Testis22 10 of 4 1.00None
Male accessory glands55 24 of 4 2.40Up
Virgin spermatheca22 44 of 4 0.96None
Mated spermatheca17 34 of 4 0.76None
Adult carcass36 43 of 4 1.60None
Larval CNS21 34 of 4 0.95None
Larval Salivary gland37 64 of 4 1.62None
Larval midgut45 34 of 4 1.97Up
Larval tubule32 34 of 4 1.40None
Larval hindgut30 24 of 4 1.34None
Larval fat body37 43 of 4 1.60Up
Larval trachea44 64 of 4 1.93Up
Larval carcass22 24 of 4 0.99None
S2 cells (growing)19 22 of 4 0.86None
Whole fly22 23 of 4

Looking for FBgn0023530. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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