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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023534 through 18771 annotations produced 1 hits



(CG17778):

Annotation Number : CG17778
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023534
Gbrowse : chrX:388932-390402 (+) // 100.0 //
Probeset : 1625951_at
Accessions : protein= NP_569846;, nucleotide= NM_130490;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0023534.
BDGP gene expression has embryonic in situ data for EG:171D11.5: 8 pix of staining in 1 body parts.
BioGrid reports that CG17778 interacts with CG17803 CG3295 CG6856 CG9951 CG33198 CG3917 CG6398 CG6605 CG8065 CG9426 .
VDRC has 1 RNAi stocks for FBgn0023534 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain551 ± 134 of 418.40Up
Head172 ± 54 of 4 5.80Up
Eye67 ± 54 of 4 2.25Up
Thoracicoabdominal ganglion286 ± 74 of 4 9.60Up
Salivary gland14 ± 61 of 4 0.47None
Crop8 ± 00 of 4 0.30Down
Midgut112 ± 164 of 4 3.80Up
Tubule5 ± 00 of 4 0.20Down
Hindgut8 ± 11 of 4 0.30Down
Heart8 ± 03 of 4 0.29Down
Fat body11 ± 34 of 4 0.38Down
Ovary4 ± 01 of 4 0.10Down
Testis5 ± 01 of 4 0.20Down
Male accessory glands10 ± 11 of 4 0.40Down
Virgin spermatheca6 ± 13 of 4 0.22Down
Mated spermatheca7 ± 12 of 4 0.26Down
Adult carcass24 ± 54 of 4 0.80None
Larval CNS111 ± 184 of 4 3.71Up
Larval Salivary gland13 ± 12 of 4 0.46Down
Larval midgut13 ± 22 of 4 0.44Down
Larval tubule4 ± 00 of 4 0.10Down
Larval hindgut7 ± 03 of 4 0.23Down
Larval fat body5 ± 10 of 4 0.20Down
Larval trachea6 ± 23 of 4 0.20Down
Larval carcass6 ± 02 of 4 0.21Down
S2 cells (growing)7 ± 13 of 4 0.26Down
Whole fly30 ± 24 of 4

Looking for FBgn0023534. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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