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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023536 through 18771 annotations produced 1 hits



(CG3156):

Annotation Number : CG3156
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023536
Gbrowse : chrX:381971-384767 (+) // 100.0 //
Probeset : 1640813_at
Accessions : protein= NP_569844;, nucleotide= NM_130488;
Pathway : 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0016021 // integral to me
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0023536.
Homophila reports that CG3156 is a close match (9e-11) to human gene ABCA4;ABCR;ARMD2;CORD3;FFM;RP19;STGD1 (NP_000341), a gene associated with Cone-rod dystrophy 3, 604116 (3);Fundus flavimaculatus, 248200 (3);Macular degeneration, age-related, 2, 153800 (3);Retinal dystrophy, early-onset severe, 248200 (3);Retinitis pigmentosa-19, 601718 (3);Stargardt disease-1, 248200 (3).
VDRC has 2 RNAi stocks for FBgn0023536 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 ± 54 of 4 1.20None
Head45 ± 34 of 4 0.60Down
Eye45 ± 24 of 4 0.64Down
Thoracicoabdominal ganglion75 ± 24 of 4 1.10None
Salivary gland41 ± 54 of 4 0.57Down
Crop70 ± 34 of 4 1.00None
Midgut47 ± 44 of 4 0.70Down
Tubule67 ± 44 of 4 0.90None
Hindgut45 ± 14 of 4 0.60Down
Heart60 ± 74 of 4 0.85None
Fat body67 ± 24 of 4 0.94None
Ovary174 ± 34 of 4 2.40Up
Testis160 ± 14 of 4 2.20Up
Male accessory glands26 ± 21 of 4 0.40Down
Virgin spermatheca37 ± 24 of 4 0.53Down
Mated spermatheca40 ± 44 of 4 0.57Down
Adult carcass59 ± 14 of 4 0.80None
Larval CNS58 ± 74 of 4 0.82None
Larval Salivary gland58 ± 44 of 4 0.82None
Larval midgut39 ± 14 of 4 0.55Down
Larval tubule56 ± 64 of 4 0.80None
Larval hindgut47 ± 24 of 4 0.66Down
Larval fat body51 ± 93 of 4 0.70None
Larval trachea38 ± 24 of 4 0.54Down
Larval carcass47 ± 44 of 4 0.67Down
S2 cells (growing)50 ± 44 of 4 0.71Down
Whole fly71 ± 54 of 4

Looking for FBgn0023536. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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