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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023541 through 18771 annotations produced 1 hits



Cyp4d14 (Cyp4d14):

Annotation Number : CG3540
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023541
Gbrowse : chrX:2067529-2069346 (-) // 100.0 //
Probeset : 1627180_at
Accessions : protein= NP_652020;, nucleotide= NM_143763;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0023541.
Homophila reports that CG3540 is a close match (1e-12) to human gene CYP2C8 (NP_000761), a gene associated with Rhabdomyolysis, cerivastatin-induced (3).
VDRC has 5 RNAi stocks for FBgn0023541 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 11 of 4 0.20Down
Head3 10 of 4 0.10Down
Eye8 22 of 4 0.25Down
Thoracicoabdominal ganglion6 10 of 4 0.20Down
Salivary gland14 70 of 4 0.40None
Crop8 20 of 4 0.20Down
Midgut623 354 of 417.10Up
Tubule74 274 of 4 2.00None
Hindgut99 64 of 4 2.70Up
Heart10 11 of 4 0.28Down
Fat body13 11 of 4 0.36Down
Ovary3 01 of 4 0.10Down
Testis4 10 of 4 0.10Down
Male accessory glands9 11 of 4 0.30Down
Virgin spermatheca8 20 of 4 0.23Down
Mated spermatheca4 10 of 4 0.13Down
Adult carcass13 30 of 4 0.40Down
Larval CNS8 14 of 4 0.23Down
Larval Salivary gland8 11 of 4 0.23Down
Larval midgut210 194 of 4 5.77Up
Larval tubule19 23 of 4 0.50None
Larval hindgut56 54 of 4 1.54None
Larval fat body48 54 of 4 1.30None
Larval trachea8 41 of 4 0.23Down
Larval carcass6 10 of 4 0.18Down
S2 cells (growing)11 13 of 4 0.30Down
Whole fly36 64 of 4

Looking for FBgn0023541. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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