FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0023542 through 18771 annotations produced 1 hits

transcription unit III (Nmd3):

Annotation Number : CG3460
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023542
Gbrowse : chrX:2076850-2078683 (-) // 100.0 //
Probeset : 1623733_at
Accessions : protein= NP_477332;, nucleotide= NM_057984;
Interpro : 0003729 // mRNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred fr
FlyMine data for FBgn0023542.
BDGP gene expression has embryonic in situ data for Nmd3: 11 pix of staining in 12 body parts.
BioGrid reports that CG3460 interacts with CG9911 .
VDRC has 4 RNAi stocks for FBgn0023542 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	130 ± 2	4 of 4	0.50	Down
Head	193 ± 10	4 of 4	0.70	Down
Eye	172 ± 2	4 of 4	0.67	Down
Thoracicoabdominal ganglion	127 ± 4	4 of 4	0.50	Down
Salivary gland	197 ± 4	4 of 4	0.77	Down
Crop	239 ± 4	4 of 4	0.90	None
Midgut	164 ± 8	4 of 4	0.60	Down
Tubule	323 ± 15	4 of 4	1.30	Up
Hindgut	221 ± 8	4 of 4	0.90	None
Heart	307 ± 12	4 of 4	1.19	None
Fat body	338 ± 16	4 of 4	1.31	Up
Ovary	342 ± 5	4 of 4	1.30	Up
Testis	35 ± 3	4 of 4	0.10	Down
Male accessory glands	385 ± 15	4 of 4	1.50	Up
Virgin spermatheca	364 ± 23	4 of 4	1.41	Up
Mated spermatheca	424 ± 16	4 of 4	1.65	Up
Adult carcass	264 ± 19	4 of 4	1.00	None
Larval CNS	201 ± 14	4 of 4	0.78	Down
Larval Salivary gland	185 ± 7	4 of 4	0.72	Down
Larval midgut	93 ± 10	4 of 4	0.36	Down
Larval tubule	136 ± 4	4 of 4	0.50	Down
Larval hindgut	184 ± 12	4 of 4	0.71	Down
Larval fat body	127 ± 4	4 of 4	0.50	Down
Larval trachea	317 ± 29	4 of 4	1.23	Up
Larval carcass	203 ± 37	4 of 4	0.79	None
S2 cells (growing)	223 ± 1	4 of 4	0.87	None
Whole fly	257 ± 16	4 of 4

Looking for FBgn0023542. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720