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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0023545 through 18771 annotations produced 1 hits



(CG4406):

Annotation Number : CG4406
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023545
Gbrowse : chrX:1901936-1903376 (-) // 100.0 //
Probeset : 1637390_at
Accessions : protein= NP_569968;, nucleotide= NM_130612;
Pathway : 0042765 // GPI-anchor transamidase complex // inferred from sequence or structural similarity
Interpro : 0003923 // GPI-anchor transamidase activity // inferred from sequence or structural similarity /// 0004197 // cysteine-t
FlyMine data for FBgn0023545.
BDGP gene expression has embryonic in situ data for EG:133E12.3: 8 pix of staining in 1 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain348 ± 24 of 4 1.60Up
Head239 ± 184 of 4 1.10None
Eye386 ± 144 of 4 1.80Up
Thoracicoabdominal ganglion263 ± 54 of 4 1.20Up
Salivary gland497 ± 114 of 4 2.31Up
Crop190 ± 44 of 4 0.90None
Midgut282 ± 74 of 4 1.30Up
Tubule160 ± 14 of 4 0.70Down
Hindgut215 ± 34 of 4 1.00None
Heart277 ± 154 of 4 1.29Up
Fat body180 ± 114 of 4 0.84None
Ovary273 ± 64 of 4 1.30Up
Testis144 ± 34 of 4 0.70Down
Male accessory glands452 ± 104 of 4 2.10Up
Virgin spermatheca133 ± 84 of 4 0.62Down
Mated spermatheca152 ± 84 of 4 0.71Down
Adult carcass197 ± 74 of 4 0.90None
Larval CNS260 ± 354 of 4 1.21None
Larval Salivary gland399 ± 254 of 4 1.86Up
Larval midgut245 ± 214 of 4 1.14None
Larval tubule190 ± 14 of 4 0.90None
Larval hindgut184 ± 104 of 4 0.86None
Larval fat body211 ± 214 of 4 1.00None
Larval trachea300 ± 84 of 4 1.40Up
Larval carcass200 ± 34 of 4 0.93None
S2 cells (growing)288 ± 74 of 4 1.34Up
Whole fly215 ± 144 of 4

Looking for FBgn0023545. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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