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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024179 through 18771 annotations produced 1 hits



wishful thinking (wit):

Annotation Number : CG10776
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024179
Gbrowse : chr3L:4064145-4071713 (-) // 100.0 //
Probeset : 1640409_at
Accessions : protein= NP_524692;, nucleotide= NM_079953;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0005886 // plasma membrane // traceabl
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trac
FlyMine data for FBgn0024179.
BDGP gene expression has embryonic in situ data for wit: 4 pix of staining in 1 body parts.
Homophila reports that CG10776 is a close match (4e-22) to human gene ACVR1B;ACVRLK4;ALK4 (NP_064733), a gene associated with Pancreatic cancer, somatic (3).
BioGrid reports that CG10776 interacts with CG11275 CG8428 .
TRiP has 2 RNAi stocks for FBgn0024179 available for purchase.
VDRC has 4 RNAi stocks for FBgn0024179 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain385 84 of 4 5.30Up
Head205 154 of 4 2.80Up
Eye374 144 of 4 5.12Up
Thoracicoabdominal ganglion319 154 of 4 4.40Up
Salivary gland279 124 of 4 3.82Up
Crop212 44 of 4 2.90Up
Midgut224 104 of 4 3.10Up
Tubule348 144 of 4 4.80Up
Hindgut66 44 of 4 0.90None
Heart416 264 of 4 5.70Up
Fat body392 554 of 4 5.38Up
Ovary20 14 of 4 0.30Down
Testis28 44 of 4 0.40Down
Male accessory glands41 44 of 4 0.60Down
Virgin spermatheca160 114 of 4 2.19Up
Mated spermatheca301 174 of 4 4.12Up
Adult carcass120 54 of 4 1.60Up
Larval CNS215 194 of 4 2.95Up
Larval Salivary gland12 14 of 4 0.17Down
Larval midgut287 204 of 4 3.94Up
Larval tubule455 244 of 4 6.20Up
Larval hindgut69 24 of 4 0.95None
Larval fat body145 154 of 4 2.00Up
Larval trachea205 224 of 4 2.81Up
Larval carcass84 84 of 4 1.15None
S2 cells (growing)2 11 of 4 0.03Down
Whole fly73 14 of 4

Looking for FBgn0024179. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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