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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024191 through 18771 annotations produced 1 hits



septin interacting protein 1 (sip1):

Annotation Number : CG7238
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024191
Gbrowse : chr2L:5721058-5723791 (+) // 100.0 //
Probeset : 1637033_at
Accessions : protein= NP_524725;, nucleotide= NM_079986;
Pathway : via spliceosome // inferred by curator /// 0006397 // mRNA processing // inferred from electronic annotation /// 000838
Interpro : 0005578 // proteinaceous extracellular matrix // inferred from sequence or structural similarity /// 0005622 // intracel
FlyMine data for FBgn0024191.
BDGP gene expression has embryonic in situ data for sip1: 4 pix of staining in 1 body parts.
BioGrid reports that CG7238 interacts with CG7757 CG8569 CG8642 CG9883 CG7274 .
VDRC has 2 RNAi stocks for FBgn0024191 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain45 ± 24 of 4 1.40Up
Head22 ± 30 of 4 0.70None
Eye21 ± 23 of 4 0.66Down
Thoracicoabdominal ganglion35 ± 04 of 4 1.10None
Salivary gland62 ± 33 of 4 1.89Up
Crop39 ± 23 of 4 1.20None
Midgut25 ± 11 of 4 0.80None
Tubule23 ± 11 of 4 0.70Down
Hindgut27 ± 10 of 4 0.80None
Heart11 ± 20 of 4 0.35Down
Fat body24 ± 30 of 4 0.73None
Ovary52 ± 24 of 4 1.60Up
Testis71 ± 24 of 4 2.20Up
Male accessory glands32 ± 61 of 4 1.00None
Virgin spermatheca22 ± 20 of 4 0.69Down
Mated spermatheca26 ± 21 of 4 0.81None
Adult carcass14 ± 30 of 4 0.50Down
Larval CNS49 ± 34 of 4 1.52Up
Larval Salivary gland54 ± 64 of 4 1.64Up
Larval midgut30 ± 53 of 4 0.93None
Larval tubule42 ± 24 of 4 1.30None
Larval hindgut32 ± 22 of 4 0.99None
Larval fat body48 ± 13 of 4 1.50Up
Larval trachea30 ± 43 of 4 0.94None
Larval carcass27 ± 20 of 4 0.85None
S2 cells (growing)47 ± 04 of 4 1.44Up
Whole fly32 ± 33 of 4

Looking for FBgn0024191. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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