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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024222 through 18771 annotations produced 1 hits



LPS-responsive kinase (ird5):

Annotation Number : CG4201
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024222
Gbrowse : chr3R:11872067-11875144 (-) // 100.0 //
Probeset : 1625974_at
Accessions : protein= NP_524751;, nucleotide= NM_080012;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0024222.
Homophila reports that CG4201 is a close match (2e-11) to human gene TYK2 (NP_003322), a gene associated with Protein-tyrosine kinase 2 deficiency, 611521 (3).
BioGrid reports that CG4201 interacts with CG5848 CG16910 .
TRiP has 1 RNAi stocks for FBgn0024222 available for purchase.
VDRC has 1 RNAi stocks for FBgn0024222 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 24 of 4 0.20Down
Head91 ± 24 of 4 0.80Down
Eye55 ± 14 of 4 0.49Down
Thoracicoabdominal ganglion30 ± 14 of 4 0.30Down
Salivary gland92 ± 94 of 4 0.83None
Crop174 ± 54 of 4 1.60Up
Midgut96 ± 24 of 4 0.90None
Tubule75 ± 84 of 4 0.70Down
Hindgut122 ± 14 of 4 1.10None
Heart85 ± 44 of 4 0.77Down
Fat body88 ± 24 of 4 0.79Down
Ovary223 ± 64 of 4 2.00Up
Testis42 ± 14 of 4 0.40Down
Male accessory glands105 ± 134 of 4 0.90None
Virgin spermatheca56 ± 14 of 4 0.51Down
Mated spermatheca82 ± 14 of 4 0.74Down
Adult carcass90 ± 64 of 4 0.80Down
Larval CNS42 ± 44 of 4 0.38Down
Larval Salivary gland62 ± 54 of 4 0.57Down
Larval midgut84 ± 24 of 4 0.76Down
Larval tubule108 ± 44 of 4 1.00None
Larval hindgut104 ± 34 of 4 0.94None
Larval fat body110 ± 104 of 4 1.00None
Larval trachea106 ± 144 of 4 0.96None
Larval carcass120 ± 74 of 4 1.08None
S2 cells (growing)260 ± 54 of 4 2.34Up
Whole fly111 ± 54 of 4

Looking for FBgn0024222. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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