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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0024227 through 18771 annotations produced 1 hits

Aurora B (ial):

Annotation Number : CG6620
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024227
Gbrowse : chr2L:10856787-10858082 (-) // 100.0 //
Probeset : 1624154_at
Accessions : protein= NP_477336;, nucleotide= NM_057988;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from direct assay /// 0000776 // kinetochore // traceable author statement /// 0005737 /
FlyMine data for FBgn0024227.
BDGP gene expression has embryonic in situ data for ial: 37 pix of staining in 11 body parts.
Homophila reports that CG6620 is a close match (5e-11) to human gene JAK3;JAKL (NP_000206), a gene associated with SCID, autosomal recessive, T-negative/B-positive type (3).
TRiP has 2 RNAi stocks for FBgn0024227 available for purchase.
VDRC has 2 RNAi stocks for FBgn0024227 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head4 10 of 4 0.10Down
Eye3 10 of 4 0.04Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland17 41 of 4 0.20Down
Crop4 10 of 4 0.10Down
Midgut6 20 of 4 0.10Down
Tubule6 10 of 4 0.10Down
Hindgut5 00 of 4 0.10Down
Heart6 00 of 4 0.07Down
Fat body9 30 of 4 0.10Down
Ovary200 54 of 4 2.20Up
Testis46 44 of 4 0.50Down
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca8 11 of 4 0.09Down
Mated spermatheca7 10 of 4 0.08Down
Adult carcass7 30 of 4 0.10Down
Larval CNS240 214 of 4 2.65Up
Larval Salivary gland10 13 of 4 0.12Down
Larval midgut12 12 of 4 0.14Down
Larval tubule7 01 of 4 0.10Down
Larval hindgut14 14 of 4 0.16Down
Larval fat body30 34 of 4 0.30Down
Larval trachea61 114 of 4 0.68Down
Larval carcass20 14 of 4 0.23Down
S2 cells (growing)238 154 of 4 2.62Up
Whole fly90 54 of 4

Looking for FBgn0024227. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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