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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024234 through 18771 annotations produced 1 hits



glass bottom boat (gbb):

Annotation Number : CG5562
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024234
Gbrowse : chr2R:19739105-19740772 (+) // 100.0 //
Probeset : 1628658_at
Accessions : protein= NP_477340;, nucleotide= NM_057992;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
Interpro : 0005125 // cytokine activity // inferred from electronic annotation /// 0005160 // transforming growth factor beta recep
FlyMine data for FBgn0024234.
Homophila reports that CG5562 is a close match (5e-15) to human gene CED;DPD1;TGFB1 (NP_000651), a gene associated with Camurati-Engelmann disease, 131300 (3);Cystic fibrosis lung disease, modifier of, 219700 (3).
BioGrid reports that CG5562 interacts with CG8863 CG15671 CG9885 CG9885 CG9885 CG9885 CG9885 CG9885 CG1891 CG1891 CG9224 CG14026 CG14026 CG14026 CG14026 CG14026 CG14026 .
TRiP has 1 RNAi stocks for FBgn0024234 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain95 ± 34 of 4 1.00None
Head166 ± 114 of 4 1.70Up
Eye183 ± 34 of 4 1.83Up
Thoracicoabdominal ganglion127 ± 54 of 4 1.30Up
Salivary gland631 ± 524 of 4 6.32Up
Crop453 ± 74 of 4 4.50Up
Midgut120 ± 74 of 4 1.20None
Tubule48 ± 14 of 4 0.50Down
Hindgut339 ± 24 of 4 3.40Up
Heart223 ± 34 of 4 2.24Up
Fat body163 ± 174 of 4 1.64Up
Ovary34 ± 14 of 4 0.30Down
Testis91 ± 44 of 4 0.90None
Male accessory glands924 ± 264 of 4 9.20Up
Virgin spermatheca134 ± 64 of 4 1.34Up
Mated spermatheca131 ± 64 of 4 1.32Up
Adult carcass203 ± 74 of 4 2.00Up
Larval CNS190 ± 154 of 4 1.91Up
Larval Salivary gland422 ± 94 of 4 4.23Up
Larval midgut127 ± 44 of 4 1.28Up
Larval tubule87 ± 24 of 4 0.90None
Larval hindgut301 ± 94 of 4 3.02Up
Larval fat body172 ± 184 of 4 1.70Up
Larval trachea571 ± 344 of 4 5.72Up
Larval carcass284 ± 134 of 4 2.85Up
S2 cells (growing)703 ± 144 of 4 7.04Up
Whole fly99 ± 44 of 4

Looking for FBgn0024234. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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