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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024236 through 18771 annotations produced 1 hits



fear of intimacy (foi):

Annotation Number : CG6817
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024236
Gbrowse : chr3L:8518343-8527084 (+) // 100.0 //
Probeset : 1641427_at
Accessions : protein= NP_523974;, nucleotide= NM_079250;
Pathway : open tracheal system // inferred from mutant phenotype /// 0035262 // gonad morphogenesis // inferred from mutant pheno
Interpro : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic anno
FlyMine data for FBgn0024236.
Homophila reports that CG6817 is a close match (1e-16) to human gene SLC39A13 (NP_689477), a gene associated with Spondylocheirodysplasia, Ehlers-Danlos syndrome-like, 612350 (3).
BioGrid reports that CG6817 interacts with CG17077 .
VDRC has 1 RNAi stocks for FBgn0024236 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain149 ± 44 of 4 0.80Down
Head187 ± 94 of 4 1.00None
Eye103 ± 44 of 4 0.54Down
Thoracicoabdominal ganglion119 ± 54 of 4 0.60Down
Salivary gland134 ± 74 of 4 0.71Down
Crop118 ± 64 of 4 0.60Down
Midgut159 ± 54 of 4 0.80Down
Tubule95 ± 14 of 4 0.50Down
Hindgut113 ± 24 of 4 0.60Down
Heart130 ± 44 of 4 0.68Down
Fat body258 ± 164 of 4 1.36Up
Ovary479 ± 104 of 4 2.50Up
Testis19 ± 14 of 4 0.10Down
Male accessory glands418 ± 204 of 4 2.20Up
Virgin spermatheca238 ± 154 of 4 1.26Up
Mated spermatheca291 ± 94 of 4 1.53Up
Adult carcass146 ± 74 of 4 0.80Down
Larval CNS322 ± 174 of 4 1.70Up
Larval Salivary gland116 ± 84 of 4 0.61Down
Larval midgut154 ± 84 of 4 0.82Down
Larval tubule95 ± 24 of 4 0.50Down
Larval hindgut135 ± 44 of 4 0.71Down
Larval fat body76 ± 64 of 4 0.40Down
Larval trachea219 ± 124 of 4 1.15Up
Larval carcass123 ± 54 of 4 0.65Down
S2 cells (growing)702 ± 344 of 4 3.70Up
Whole fly190 ± 84 of 4

Looking for FBgn0024236. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime