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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024251 through 18771 annotations produced 2 hits



bobby sox /// penguin (bbx /// pen):

Annotation Number : CG1685
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015527
Gbrowse : chrX:21217529-21220866 (-) // 100.0 //
Probeset : 1623956_at
Accessions : protein= NP_523429;, nucleotide= NM_078705;
Pathway : DNA-dependent // inferred from sequence similarity /// 0007475 // apposition of dorsal and ventral imaginal disc-derive
Interpro : 0005634 // nucleus // inferred from curator /// 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0015527.
BDGP gene expression has embryonic in situ data for pen: 12 pix of staining in 22 body parts.
BioGrid reports that CG1685 interacts with CG17604 .
TRiP has 2 RNAi stocks for FBgn0015527 available for purchase.
VDRC has 1 RNAi stocks for FBgn0015527 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 ± 34 of 4 0.50Down
Head73 ± 34 of 4 0.50Down
Eye52 ± 24 of 4 0.34Down
Thoracicoabdominal ganglion94 ± 54 of 4 0.60Down
Salivary gland99 ± 74 of 4 0.64Down
Crop74 ± 24 of 4 0.50Down
Midgut89 ± 54 of 4 0.60Down
Tubule67 ± 114 of 4 0.40Down
Hindgut71 ± 54 of 4 0.50Down
Heart46 ± 44 of 4 0.30Down
Fat body115 ± 244 of 4 0.75Down
Ovary259 ± 54 of 4 1.70Up
Testis24 ± 04 of 4 0.20Down
Male accessory glands132 ± 114 of 4 0.90None
Virgin spermatheca87 ± 34 of 4 0.56Down
Mated spermatheca124 ± 34 of 4 0.81Down
Adult carcass83 ± 54 of 4 0.50Down
Larval CNS182 ± 64 of 4 1.18Up
Larval Salivary gland162 ± 144 of 4 1.05None
Larval midgut66 ± 64 of 4 0.43Down
Larval tubule29 ± 34 of 4 0.20Down
Larval hindgut94 ± 84 of 4 0.61Down
Larval fat body34 ± 63 of 4 0.20Down
Larval trachea169 ± 114 of 4 1.10None
Larval carcass152 ± 344 of 4 0.98None
S2 cells (growing)202 ± 64 of 4 1.31Up
Whole fly154 ± 74 of 4



bobby sox /// waclaw (bbx /// waw):

Annotation Number : CG32527
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024182 /// FBgn0024251
Gbrowse : chrX:21234054-21244175 (+) // 100.0 //
Probeset : 1627668_s_at
Accessions : protein= NP_001027087; /// NP_001027088; /// NP_001027089;, nucleotide= NM_001031916; /// NM_001031917; /// NM_001031918;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006412 // translation // inferred from sequence o
Interpro : 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0024182 /// FBgn0024251.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain692 ± 124 of 4 2.30Up
Head336 ± 84 of 4 1.10Up
Eye390 ± 184 of 4 1.30Up
Thoracicoabdominal ganglion617 ± 114 of 4 2.10Up
Salivary gland639 ± 24 of 4 2.13Up
Crop309 ± 54 of 4 1.00None
Midgut200 ± 134 of 4 0.70Down
Tubule522 ± 84 of 4 1.70Up
Hindgut399 ± 74 of 4 1.30Up
Heart246 ± 74 of 4 0.82Down
Fat body343 ± 174 of 4 1.14Up
Ovary503 ± 04 of 4 1.70Up
Testis66 ± 24 of 4 0.20Down
Male accessory glands359 ± 144 of 4 1.20Up
Virgin spermatheca394 ± 134 of 4 1.31Up
Mated spermatheca357 ± 134 of 4 1.19Up
Adult carcass504 ± 394 of 4 1.70Up
Larval CNS236 ± 104 of 4 0.79Down
Larval Salivary gland814 ± 384 of 4 2.71Up
Larval midgut365 ± 244 of 4 1.22None
Larval tubule444 ± 44 of 4 1.50Up
Larval hindgut360 ± 114 of 4 1.20Up
Larval fat body349 ± 194 of 4 1.20None
Larval trachea194 ± 164 of 4 0.65Down
Larval carcass521 ± 424 of 4 1.74Up
S2 cells (growing)260 ± 34 of 4 0.87Down
Whole fly300 ± 54 of 4

Looking for FBgn0024251. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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