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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024273 through 18771 annotations produced 2 hits



Wiskott-Aldrich syndrome protein (WASp):

Annotation Number : CG1520
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024273
Gbrowse : chr3R:24650227-24653105 (-) // 100.0 //
Probeset : 1641653_at
Accessions : protein= NP_651637; /// NP_733257; /// NP_788755;, nucleotide= NM_143380; /// NM_170378; /// NM_176578;
Pathway : 0005902 // microvillus // inferred from mutant phenotype /// 0015629 // actin cytoskeleton // inferred from electronic a
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005083 // small GTPase regulator activi
FlyMine data for FBgn0024273.
BDGP gene expression has embryonic in situ data for WASp: 18 pix of staining in 7 body parts.
Homophila reports that CG1520 is a close match (3e-36) to human gene IMD2;THC;WAS (NP_000368), a gene associated with Neutropenia, severe congenital, X-linked, 300299 (3);Thrombocytopenia, X-linked, 313900 (3);Thrombocytopenia, X-linked, intermittent, 313900 (3);Wiskott-Aldrich syndrome, 301000 (3).
BioGrid reports that CG1520 interacts with CG7251 CG9553 CG5460 CG3936 CG3936 .
TRiP has 3 RNAi stocks for FBgn0024273 available for purchase.
VDRC has 3 RNAi stocks for FBgn0024273 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain306 ± 84 of 4 2.80Up
Head147 ± 64 of 4 1.30Up
Eye179 ± 154 of 4 1.62Up
Thoracicoabdominal ganglion327 ± 54 of 4 3.00Up
Salivary gland156 ± 34 of 4 1.42Up
Crop128 ± 44 of 4 1.20Up
Midgut717 ± 204 of 4 6.50Up
Tubule414 ± 174 of 4 3.80Up
Hindgut191 ± 114 of 4 1.70Up
Heart51 ± 24 of 4 0.46Down
Fat body65 ± 64 of 4 0.59Down
Ovary98 ± 34 of 4 0.90Down
Testis30 ± 14 of 4 0.30Down
Male accessory glands67 ± 24 of 4 0.60Down
Virgin spermatheca102 ± 84 of 4 0.93None
Mated spermatheca111 ± 104 of 4 1.01None
Adult carcass43 ± 54 of 4 0.40Down
Larval CNS274 ± 264 of 4 2.49Up
Larval Salivary gland126 ± 84 of 4 1.14None
Larval midgut881 ± 204 of 4 7.98Up
Larval tubule421 ± 124 of 4 3.80Up
Larval hindgut236 ± 164 of 4 2.14Up
Larval fat body120 ± 54 of 4 1.10None
Larval trachea88 ± 64 of 4 0.80Down
Larval carcass259 ± 104 of 4 2.35Up
S2 cells (growing)284 ± 114 of 4 2.58Up
Whole fly110 ± 34 of 4



Wiskott-Aldrich syndrome protein (WASp):

Annotation Number : CG1520
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024273
Gbrowse : chr3R:24650885-24657757 (-) // 100.0 //
Probeset : 1625470_s_at
Accessions : protein= NP_651637; /// NP_733257; /// NP_788755;, nucleotide= NM_143380; /// NM_170378; /// NM_176578;
Pathway : 0005902 // microvillus // inferred from mutant phenotype /// 0015629 // actin cytoskeleton // inferred from electronic a
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity /// 0005083 // small GTPase regulator activi
FlyMine data for FBgn0024273.
BDGP gene expression has embryonic in situ data for WASp: 18 pix of staining in 7 body parts.
Homophila reports that CG1520 is a close match (3e-36) to human gene IMD2;THC;WAS (NP_000368), a gene associated with Neutropenia, severe congenital, X-linked, 300299 (3);Thrombocytopenia, X-linked, 313900 (3);Thrombocytopenia, X-linked, intermittent, 313900 (3);Wiskott-Aldrich syndrome, 301000 (3).
BioGrid reports that CG1520 interacts with CG7251 CG9553 CG5460 CG3936 CG3936 .
TRiP has 3 RNAi stocks for FBgn0024273 available for purchase.
VDRC has 3 RNAi stocks for FBgn0024273 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain61 ± 14 of 4 1.10None
Head38 ± 44 of 4 0.70Down
Eye40 ± 44 of 4 0.71Down
Thoracicoabdominal ganglion72 ± 74 of 4 1.30None
Salivary gland38 ± 34 of 4 0.67Down
Crop39 ± 14 of 4 0.70Down
Midgut98 ± 54 of 4 1.70Up
Tubule39 ± 14 of 4 0.70Down
Hindgut37 ± 24 of 4 0.70Down
Heart16 ± 23 of 4 0.29Down
Fat body17 ± 24 of 4 0.31Down
Ovary94 ± 44 of 4 1.70Up
Testis134 ± 84 of 4 2.40Up
Male accessory glands27 ± 33 of 4 0.50Down
Virgin spermatheca10 ± 11 of 4 0.18Down
Mated spermatheca8 ± 10 of 4 0.15Down
Adult carcass22 ± 23 of 4 0.40Down
Larval CNS36 ± 14 of 4 0.65Down
Larval Salivary gland31 ± 33 of 4 0.55Down
Larval midgut84 ± 24 of 4 1.49Up
Larval tubule79 ± 34 of 4 1.40Up
Larval hindgut30 ± 34 of 4 0.54Down
Larval fat body66 ± 104 of 4 1.20None
Larval trachea24 ± 23 of 4 0.44Down
Larval carcass38 ± 54 of 4 0.67Down
S2 cells (growing)105 ± 14 of 4 1.85Up
Whole fly56 ± 34 of 4

Looking for FBgn0024273. 2 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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