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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024291 through 18771 annotations produced 1 hits



Sir2 (Sir2):

Annotation Number : CG5216
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024291
Gbrowse : chr2L:13165550-13169551 (+) // 100.0 //
Probeset : 1628368_at
Accessions : protein= NP_477351;, nucleotide= NM_058003;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005654 // nucleoplasm // inferred from direct assay /// 0005737 //
Interpro : "0004407 // histone deacetylase activity // inferred from direct assay /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0024291.
BDGP gene expression has embryonic in situ data for Sir2: 4 pix of staining in 2 body parts.
BioGrid reports that CG5216 interacts with CG6459 CG5670 CG6770 CG8893 CG9446 .
TRiP has 2 RNAi stocks for FBgn0024291 available for purchase.
VDRC has 4 RNAi stocks for FBgn0024291 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain553 54 of 4 1.40Up
Head384 204 of 4 0.90None
Eye373 214 of 4 0.92None
Thoracicoabdominal ganglion398 74 of 4 1.00None
Salivary gland616 354 of 4 1.52Up
Crop378 184 of 4 0.90None
Midgut296 84 of 4 0.70None
Tubule373 254 of 4 0.90None
Hindgut420 194 of 4 1.00None
Heart356 144 of 4 0.88None
Fat body220 434 of 4 0.54Down
Ovary758 184 of 4 1.90Up
Testis32 34 of 4 0.10Down
Male accessory glands309 54 of 4 0.80None
Virgin spermatheca508 314 of 4 1.25None
Mated spermatheca476 244 of 4 1.17None
Adult carcass194 54 of 4 0.50Down
Larval CNS471 334 of 4 1.16None
Larval Salivary gland511 334 of 4 1.26None
Larval midgut258 84 of 4 0.64Down
Larval tubule313 184 of 4 0.80None
Larval hindgut328 94 of 4 0.81None
Larval fat body132 74 of 4 0.30Down
Larval trachea328 394 of 4 0.81None
Larval carcass319 84 of 4 0.79None
S2 cells (growing)174 124 of 4 0.43Down
Whole fly406 364 of 4

Looking for FBgn0024291. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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