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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024293 through 18771 annotations produced 1 hits



Serine protease inhibitor 2 (Spn43Ab):

Annotation Number : CG1865
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024293
Gbrowse : chr2R:3039163-3041188 (-) // 100.0 //
Probeset : 1635183_at
Accessions : protein= NP_001027395; /// NP_524804;, nucleotide= NM_001032224; /// NM_080065;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0004867 /
FlyMine data for FBgn0024293.
Homophila reports that CG1865 is a close match (1e-12) to human gene PLI;SERPINF2 (NP_000925), a gene associated with Plasmin inhibitor deficiency (3).
TRiP has 1 RNAi stocks for FBgn0024293 available for purchase.
VDRC has 4 RNAi stocks for FBgn0024293 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1107 ± 154 of 4 1.20Up
Head2233 ± 1394 of 4 2.40Up
Eye1968 ± 1754 of 4 2.13Up
Thoracicoabdominal ganglion1179 ± 204 of 4 1.30Up
Salivary gland50 ± 54 of 4 0.05Down
Crop2011 ± 174 of 4 2.20Up
Midgut15 ± 31 of 4 0.00Down
Tubule136 ± 223 of 4 0.10Down
Hindgut3056 ± 474 of 4 3.30Up
Heart4073 ± 2854 of 4 4.40Up
Fat body4223 ± 4134 of 4 4.56Up
Ovary8 ± 23 of 4 0.00Down
Testis146 ± 94 of 4 0.20Down
Male accessory glands18 ± 22 of 4 0.00Down
Virgin spermatheca4610 ± 1534 of 4 4.98Up
Mated spermatheca4546 ± 2274 of 4 4.91Up
Adult carcass3434 ± 1884 of 4 3.70Up
Larval CNS227 ± 544 of 4 0.25Down
Larval Salivary gland80 ± 44 of 4 0.09Down
Larval midgut7 ± 10 of 4 0.01Down
Larval tubule11 ± 11 of 4 0.00Down
Larval hindgut1768 ± 1194 of 4 1.91Up
Larval fat body2234 ± 2074 of 4 2.40Up
Larval trachea347 ± 954 of 4 0.38Down
Larval carcass184 ± 254 of 4 0.20Down
S2 cells (growing)5 ± 10 of 4 0.01Down
Whole fly925 ± 454 of 4

Looking for FBgn0024293. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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