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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024314 through 18771 annotations produced 1 hits



Phospholipase A2 activator protein (Plap):

Annotation Number : CG5105
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024314
Gbrowse : chr2L:1167168-1170079 (-) // 100.0 //
Probeset : 1632166_at
Accessions : protein= NP_524666;, nucleotide= NM_079927;
Pathway : 0045169 // fusome // non-traceable author statement
Interpro : 0016005 // phospholipase A2 activator activity // inferred from sequence or structural similarity /// 0016005 // phospho
FlyMine data for FBgn0024314.
BDGP gene expression has embryonic in situ data for Plap: 12 pix of staining in 6 body parts.
Homophila reports that CG5105 is a close match (1e-15) to human gene LIS1;PAFAH1B1 (NP_000421), a gene associated with Lissencephaly-1, 607432 (3);Subcortical laminar heterotopia (3).
BioGrid reports that CG5105 interacts with CG7145 .
TRiP has 1 RNAi stocks for FBgn0024314 available for purchase.
VDRC has 6 RNAi stocks for FBgn0024314 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain82 ± 24 of 4 0.40Down
Head79 ± 54 of 4 0.40Down
Eye103 ± 54 of 4 0.56Down
Thoracicoabdominal ganglion87 ± 24 of 4 0.50Down
Salivary gland226 ± 44 of 4 1.22Up
Crop174 ± 24 of 4 0.90None
Midgut127 ± 64 of 4 0.70Down
Tubule195 ± 74 of 4 1.10None
Hindgut144 ± 54 of 4 0.80Down
Heart150 ± 44 of 4 0.81Down
Fat body181 ± 184 of 4 0.98None
Ovary240 ± 24 of 4 1.30Up
Testis440 ± 94 of 4 2.40Up
Male accessory glands177 ± 104 of 4 1.00None
Virgin spermatheca127 ± 34 of 4 0.68Down
Mated spermatheca131 ± 184 of 4 0.71Down
Adult carcass189 ± 94 of 4 1.00None
Larval CNS356 ± 134 of 4 1.92Up
Larval Salivary gland395 ± 214 of 4 2.13Up
Larval midgut195 ± 134 of 4 1.05None
Larval tubule367 ± 174 of 4 2.00Up
Larval hindgut260 ± 124 of 4 1.40Up
Larval fat body269 ± 64 of 4 1.40Up
Larval trachea251 ± 224 of 4 1.35Up
Larval carcass365 ± 354 of 4 1.97Up
S2 cells (growing)455 ± 104 of 4 2.45Up
Whole fly186 ± 84 of 4

Looking for FBgn0024314. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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