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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024360 through 18771 annotations produced 1 hits



(CG11418):

Annotation Number : CG11418
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024360
Gbrowse : chrX:1238906-1243390 (-) // 100.0 //
Probeset : 1635290_at
Accessions : protein= NP_569904; /// NP_996325;, nucleotide= NM_130548; /// NM_206602;
FlyMine data for FBgn0024360.
VDRC has 1 RNAi stocks for FBgn0024360 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 ± 14 of 4 0.50Down
Head36 ± 24 of 4 0.30Down
Eye36 ± 04 of 4 0.34Down
Thoracicoabdominal ganglion66 ± 44 of 4 0.60Down
Salivary gland44 ± 24 of 4 0.42Down
Crop41 ± 14 of 4 0.40Down
Midgut69 ± 34 of 4 0.60Down
Tubule50 ± 34 of 4 0.50Down
Hindgut38 ± 24 of 4 0.40Down
Heart31 ± 34 of 4 0.30Down
Fat body38 ± 24 of 4 0.36Down
Ovary182 ± 44 of 4 1.70Up
Testis82 ± 24 of 4 0.80Down
Male accessory glands60 ± 54 of 4 0.60Down
Virgin spermatheca31 ± 14 of 4 0.29Down
Mated spermatheca35 ± 24 of 4 0.34Down
Adult carcass45 ± 44 of 4 0.40Down
Larval CNS70 ± 54 of 4 0.66Down
Larval Salivary gland65 ± 54 of 4 0.61Down
Larval midgut61 ± 54 of 4 0.58Down
Larval tubule56 ± 14 of 4 0.50Down
Larval hindgut71 ± 54 of 4 0.67Down
Larval fat body27 ± 73 of 4 0.30Down
Larval trachea68 ± 74 of 4 0.64Down
Larval carcass47 ± 54 of 4 0.44Down
S2 cells (growing)60 ± 24 of 4 0.56Down
Whole fly106 ± 54 of 4

Looking for FBgn0024360. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime