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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024362 through 18771 annotations produced 1 hits



(CG11412):

Annotation Number : CG11412
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024362
Gbrowse : chrX:1236117-1238809 (+) // 100.0 //
Probeset : 1623626_a_at
Accessions : protein= NP_569903; /// NP_726727; /// NP_726728;, nucleotide= NM_130547; /// NM_166878; /// NM_166879;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008080 // N-acetyltransferase activity // inferred
FlyMine data for FBgn0024362.
BDGP gene expression has embryonic in situ data for EG:8D8.6: 6 pix of staining in 1 body parts.
BioGrid reports that CG11412 interacts with CG4065 CG5919 CG31363 .
VDRC has 2 RNAi stocks for FBgn0024362 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain231 24 of 4 1.20Up
Head151 104 of 4 0.80Down
Eye109 74 of 4 0.56Down
Thoracicoabdominal ganglion191 94 of 4 1.00None
Salivary gland167 134 of 4 0.85None
Crop291 154 of 4 1.50Up
Midgut139 34 of 4 0.70Down
Tubule144 44 of 4 0.70Down
Hindgut205 34 of 4 1.00None
Heart236 144 of 4 1.21None
Fat body230 204 of 4 1.17None
Ovary301 34 of 4 1.50Up
Testis32 14 of 4 0.20Down
Male accessory glands160 84 of 4 0.80Down
Virgin spermatheca243 34 of 4 1.24Up
Mated spermatheca236 74 of 4 1.21Up
Adult carcass244 84 of 4 1.20Up
Larval CNS258 174 of 4 1.32Up
Larval Salivary gland157 34 of 4 0.80Down
Larval midgut208 54 of 4 1.06None
Larval tubule233 154 of 4 1.20None
Larval hindgut257 84 of 4 1.31Up
Larval fat body188 134 of 4 1.00None
Larval trachea214 124 of 4 1.10None
Larval carcass286 54 of 4 1.46Up
S2 cells (growing)179 54 of 4 0.92None
Whole fly196 114 of 4

Looking for FBgn0024362. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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