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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0024371 through 18771 annotations produced 1 hits

E2F transcription factor 2 (E2f2):

Annotation Number : CG1071
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024371
Gbrowse : chr2L:21154285-21156245 (-) // 100.0 //
Probeset : 1627605_at
Accessions : protein= NP_477355;, nucleotide= NM_058007;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007113 // endomitotic cell cycle // traceable author statemen
Interpro : 0000785 // chromatin // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 000
FlyMine data for FBgn0024371.
BDGP gene expression has embryonic in situ data for E2f2: 27 pix of staining in 27 body parts.
BioGrid reports that CG1071 interacts with CG15109 CG4654 CG11138 CG12645 CG12936 CG13110 CG15124 CG2168 CG31446 CG3751 CG4070 CG4328 CG4353 CG4463 CG5920 CG6779 CG6871 CG7057 CG7590 CG7933 CG7937 CG8882 CG8933 CG9916 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG13510 CG7296 CG32381 CG15043 CG15676 CG9046 CG15006 CG13558 CG2948 CG17508 CG31204 CG5708 CG11182 CG2944 CG13806 CG32139 CG5473 CG31000 CG32045 CG15218 CG31679 CG12723 CG31811 CG1034 CG15112 CG17309 CG4184 CG13900 CG10571 CG32169 CG1765 CG11138 CG14627 CG12085 CG11719 CG5643 CG33141 CG33297 Dmel CG13383 CG8181 .
TRiP has 2 RNAi stocks for FBgn0024371 available for purchase.
VDRC has 2 RNAi stocks for FBgn0024371 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain100 44 of 4 0.40Down
Head77 34 of 4 0.30Down
Eye111 34 of 4 0.44Down
Thoracicoabdominal ganglion95 14 of 4 0.40Down
Salivary gland159 104 of 4 0.63Down
Crop128 124 of 4 0.50Down
Midgut91 34 of 4 0.40Down
Tubule136 74 of 4 0.50Down
Hindgut119 14 of 4 0.50Down
Heart69 34 of 4 0.28Down
Fat body54 74 of 4 0.21Down
Ovary621 104 of 4 2.50Up
Testis265 84 of 4 1.10None
Male accessory glands169 104 of 4 0.70Down
Virgin spermatheca72 64 of 4 0.29Down
Mated spermatheca85 64 of 4 0.34Down
Adult carcass82 24 of 4 0.30Down
Larval CNS212 174 of 4 0.84Down
Larval Salivary gland238 134 of 4 0.94None
Larval midgut60 34 of 4 0.24Down
Larval tubule117 04 of 4 0.50Down
Larval hindgut103 64 of 4 0.41Down
Larval fat body117 84 of 4 0.50Down
Larval trachea143 44 of 4 0.57Down
Larval carcass83 14 of 4 0.33Down
S2 cells (growing)209 54 of 4 0.83Down
Whole fly252 44 of 4

Looking for FBgn0024371. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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