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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024555 through 18771 annotations produced 1 hits



falafel (flfl):

Annotation Number : CG9351
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024555
Gbrowse : chr3R:9509679-9519629 (+) // 100.0 //
Probeset : 1637302_s_at
Accessions : protein= NP_650304; /// NP_731849;, nucleotide= NM_142047; /// NM_169548;
Pathway : engulfment // inferred from mutant phenotype /// 0007391 // dorsal closure // inferred from mutant phenotype /// 000740
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotatio
FlyMine data for FBgn0024555.
TRiP has 3 RNAi stocks for FBgn0024555 available for purchase.
VDRC has 2 RNAi stocks for FBgn0024555 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain841 ± 274 of 4 4.60Up
Head385 ± 204 of 4 2.10Up
Eye445 ± 334 of 4 2.44Up
Thoracicoabdominal ganglion689 ± 194 of 4 3.80Up
Salivary gland637 ± 514 of 4 3.50Up
Crop504 ± 104 of 4 2.80Up
Midgut363 ± 114 of 4 2.00Up
Tubule425 ± 214 of 4 2.30Up
Hindgut483 ± 74 of 4 2.70Up
Heart327 ± 54 of 4 1.80Up
Fat body309 ± 394 of 4 1.70Up
Ovary175 ± 104 of 4 1.00None
Testis47 ± 24 of 4 0.30Down
Male accessory glands479 ± 124 of 4 2.60Up
Virgin spermatheca342 ± 414 of 4 1.88Up
Mated spermatheca419 ± 474 of 4 2.30Up
Adult carcass210 ± 134 of 4 1.20None
Larval CNS1123 ± 894 of 4 6.16Up
Larval Salivary gland342 ± 94 of 4 1.88Up
Larval midgut235 ± 154 of 4 1.29Up
Larval tubule372 ± 164 of 4 2.00Up
Larval hindgut373 ± 84 of 4 2.05Up
Larval fat body238 ± 154 of 4 1.30Up
Larval trachea626 ± 114 of 4 3.44Up
Larval carcass336 ± 154 of 4 1.85Up
S2 cells (growing)674 ± 54 of 4 3.70Up
Whole fly182 ± 54 of 4

Looking for FBgn0024555. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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