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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024728 through 18771 annotations produced 1 hits



Slip1 (Slip1):

Annotation Number : CG1783
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024728
Gbrowse : chr4:684213-690510 (+) // 100.0 //
Probeset : 1623023_at
Accessions : protein= NP_651933;, nucleotide= NM_143676;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from electro
FlyMine data for FBgn0024728.
BioGrid reports that CG1783 interacts with CG18336 CG3035 CG8598 CG8614 CG10693 .
VDRC has 3 RNAi stocks for FBgn0024728 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain649 ± 164 of 4 3.20Up
Head227 ± 144 of 4 1.10None
Eye239 ± 64 of 4 1.17None
Thoracicoabdominal ganglion510 ± 104 of 4 2.50Up
Salivary gland169 ± 74 of 4 0.83None
Crop192 ± 64 of 4 0.90None
Midgut130 ± 64 of 4 0.60Down
Tubule280 ± 104 of 4 1.40Up
Hindgut150 ± 14 of 4 0.70None
Heart121 ± 84 of 4 0.60Down
Fat body168 ± 164 of 4 0.83None
Ovary414 ± 44 of 4 2.00Up
Testis153 ± 104 of 4 0.80None
Male accessory glands126 ± 24 of 4 0.60Down
Virgin spermatheca256 ± 114 of 4 1.26None
Mated spermatheca310 ± 24 of 4 1.52Up
Adult carcass130 ± 94 of 4 0.60Down
Larval CNS512 ± 524 of 4 2.51Up
Larval Salivary gland216 ± 54 of 4 1.06None
Larval midgut143 ± 44 of 4 0.70Down
Larval tubule281 ± 94 of 4 1.40Up
Larval hindgut173 ± 64 of 4 0.85None
Larval fat body271 ± 54 of 4 1.30Up
Larval trachea200 ± 164 of 4 0.98None
Larval carcass137 ± 54 of 4 0.67Down
S2 cells (growing)84 ± 54 of 4 0.41Down
Whole fly203 ± 174 of 4

Looking for FBgn0024728. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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