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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0024732 through 18771 annotations produced 1 hits

Inhibitor of CAD (Drep-1):

Annotation Number : CG8357
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024732
Gbrowse : chr2R:7932133-7937678 (+) // 100.0 //
Probeset : 1626405_at
Accessions : protein= NP_610721;, nucleotide= NM_136877;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0024732.
BDGP gene expression has embryonic in situ data for Rep1: 8 pix of staining in 1 body parts.
BioGrid reports that CG8357 interacts with CG9414 CG8888 CG9470 CG7780 .
VDRC has 4 RNAi stocks for FBgn0024732 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain179 94 of 4 2.80Up
Head54 54 of 4 0.80None
Eye12 14 of 4 0.19Down
Thoracicoabdominal ganglion86 64 of 4 1.30None
Salivary gland26 43 of 4 0.41Down
Crop52 84 of 4 0.80None
Midgut3 10 of 4 0.10Down
Tubule2 00 of 4 0.00Down
Hindgut14 14 of 4 0.20Down
Heart33 54 of 4 0.52Down
Fat body60 84 of 4 0.93None
Ovary217 84 of 4 3.30Up
Testis4 00 of 4 0.10Down
Male accessory glands30 34 of 4 0.50Down
Virgin spermatheca27 24 of 4 0.42Down
Mated spermatheca25 14 of 4 0.40Down
Adult carcass30 43 of 4 0.50Down
Larval CNS78 94 of 4 1.21None
Larval Salivary gland14 22 of 4 0.22Down
Larval midgut9 00 of 4 0.15Down
Larval tubule1 00 of 4 0.00Down
Larval hindgut19 14 of 4 0.29Down
Larval fat body15 22 of 4 0.20Down
Larval trachea21 24 of 4 0.33Down
Larval carcass18 24 of 4 0.29Down
S2 cells (growing)37 04 of 4 0.57None
Whole fly65 94 of 4

Looking for FBgn0024732. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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