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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024754 through 18771 annotations produced 1 hits



flotillin-1 (Flo):

Annotation Number : CG8200
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024754
Gbrowse : chr2R:11453771-11456907 (-) // 100.0 //
Probeset : 1640276_a_at
Accessions : protein= NP_477358; /// NP_725476;, nucleotide= NM_058010; /// NM_166102;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic anno
Interpro : 0005198 // structural molecule activity // non-traceable author statement /// 0005515 // protein binding // inferred fro
FlyMine data for FBgn0024754.
BDGP gene expression has embryonic in situ data for Flo: 29 pix of staining in 18 body parts.
BioGrid reports that CG8200 interacts with CG8942 .
TRiP has 2 RNAi stocks for FBgn0024754 available for purchase.
VDRC has 4 RNAi stocks for FBgn0024754 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain506 ± 84 of 4 3.80Up
Head312 ± 104 of 4 2.40Up
Eye536 ± 134 of 4 4.05Up
Thoracicoabdominal ganglion464 ± 124 of 4 3.50Up
Salivary gland176 ± 134 of 4 1.33Up
Crop618 ± 174 of 4 4.70Up
Midgut120 ± 14 of 4 0.90None
Tubule223 ± 134 of 4 1.70Up
Hindgut281 ± 14 of 4 2.10Up
Heart503 ± 134 of 4 3.81Up
Fat body162 ± 134 of 4 1.23Up
Ovary116 ± 54 of 4 0.90Down
Testis109 ± 34 of 4 0.80Down
Male accessory glands115 ± 34 of 4 0.90Down
Virgin spermatheca332 ± 144 of 4 2.51Up
Mated spermatheca398 ± 34 of 4 3.01Up
Adult carcass223 ± 94 of 4 1.70Up
Larval CNS867 ± 524 of 4 6.56Up
Larval Salivary gland201 ± 84 of 4 1.52Up
Larval midgut127 ± 94 of 4 0.97None
Larval tubule211 ± 34 of 4 1.60Up
Larval hindgut417 ± 74 of 4 3.15Up
Larval fat body230 ± 254 of 4 1.70Up
Larval trachea970 ± 654 of 4 7.33Up
Larval carcass358 ± 44 of 4 2.71Up
S2 cells (growing)611 ± 184 of 4 4.62Up
Whole fly132 ± 44 of 4

Looking for FBgn0024754. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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