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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024804 through 18771 annotations produced 1 hits



Helicase 80 (Dbp80):

Annotation Number : CG17023
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024804
Gbrowse : chr3LHet:2409857-2544022 (+) // 100.0 //
Probeset : 1631030_at
Accessions : protein= NP_001015151; /// NP_001015152; /// NP_001104432;, nucleotide= NM_001015151; /// NM_001015152; /// NM_001110962;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from electronic annota
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fr
FlyMine data for FBgn0024804.
TRiP has 1 RNAi stocks for FBgn0024804 available for purchase.
VDRC has 1 RNAi stocks for FBgn0024804 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain637 ± 174 of 4 1.80Up
Head389 ± 154 of 4 1.10None
Eye743 ± 534 of 4 2.07Up
Thoracicoabdominal ganglion683 ± 154 of 4 1.90Up
Salivary gland455 ± 34 of 4 1.27Up
Crop432 ± 134 of 4 1.20Up
Midgut297 ± 124 of 4 0.80Down
Tubule412 ± 164 of 4 1.10Up
Hindgut372 ± 104 of 4 1.00None
Heart600 ± 154 of 4 1.67Up
Fat body288 ± 254 of 4 0.80Down
Ovary507 ± 84 of 4 1.40Up
Testis245 ± 64 of 4 0.70Down
Male accessory glands474 ± 134 of 4 1.30Up
Virgin spermatheca261 ± 64 of 4 0.73Down
Mated spermatheca337 ± 154 of 4 0.94None
Adult carcass293 ± 124 of 4 0.80Down
Larval CNS717 ± 154 of 4 2.00Up
Larval Salivary gland673 ± 344 of 4 1.88Up
Larval midgut239 ± 74 of 4 0.67Down
Larval tubule1104 ± 384 of 4 3.10Up
Larval hindgut457 ± 74 of 4 1.27Up
Larval fat body391 ± 294 of 4 1.10None
Larval trachea743 ± 734 of 4 2.07Up
Larval carcass420 ± 274 of 4 1.17None
S2 cells (growing)386 ± 124 of 4 1.08None
Whole fly358 ± 184 of 4

Looking for FBgn0024804. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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