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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024846 through 18771 annotations produced 1 hits



p38b (p38b):

Annotation Number : CG7393
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024846
Gbrowse : chr2L:13780695-13782611 (+) // 99.67 //
Probeset : 1622982_at
Accessions : protein= NP_477361;, nucleotide= NM_058013;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0024846.
BDGP gene expression has embryonic in situ data for p38b: 24 pix of staining in 13 body parts.
Homophila reports that CG7393 is a close match (9e-11) to human gene MEN2A;RET (NP_065681), a gene associated with Central hypoventilation syndrome, congenital, 209880 (3);Hirschsprung disease, 142623 (3);Medullary thyroid carcinoma, 155240 (3);Multiple endocrine neoplasia IIA, 171400 (3);Multiple endocrine neoplasia IIB, 162300 (3);Pheochromocytoma, 171300 (3);Renal agenesis, 191830 (3).
BioGrid reports that CG7393 interacts with CG7938 CG8159 CG9856 CG8392 CG3578 CG9885 CG14026 .
TRiP has 2 RNAi stocks for FBgn0024846 available for purchase.
VDRC has 1 RNAi stocks for FBgn0024846 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain202 44 of 4 0.70Down
Head221 34 of 4 0.80Down
Eye267 64 of 4 0.99None
Thoracicoabdominal ganglion214 64 of 4 0.80Down
Salivary gland540 194 of 4 1.99Up
Crop468 54 of 4 1.70Up
Midgut430 164 of 4 1.60Up
Tubule734 84 of 4 2.70Up
Hindgut384 74 of 4 1.40Up
Heart242 44 of 4 0.90Down
Fat body240 214 of 4 0.89None
Ovary324 54 of 4 1.20Up
Testis29 34 of 4 0.10Down
Male accessory glands288 74 of 4 1.10None
Virgin spermatheca222 104 of 4 0.82Down
Mated spermatheca259 94 of 4 0.96None
Adult carcass276 104 of 4 1.00None
Larval CNS271 144 of 4 1.00None
Larval Salivary gland273 64 of 4 1.01None
Larval midgut504 44 of 4 1.86Up
Larval tubule574 204 of 4 2.10Up
Larval hindgut369 164 of 4 1.36Up
Larval fat body131 104 of 4 0.50Down
Larval trachea303 74 of 4 1.12Up
Larval carcass279 74 of 4 1.03None
S2 cells (growing)346 104 of 4 1.28Up
Whole fly271 24 of 4

Looking for FBgn0024846. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime