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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024920 through 18771 annotations produced 1 hits



Ts (Ts):

Annotation Number : CG3181
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024920
Gbrowse : chr2L:2968292-2969620 (-) // 100.0 //
Probeset : 1624747_at
Accessions : protein= NP_477367;, nucleotide= NM_058019;
Interpro : 0004799 // thymidylate synthase activity // inferred from sequence or structural similarity /// 0004799 // thymidylate s
FlyMine data for FBgn0024920.
BDGP gene expression has embryonic in situ data for Ts: 14 pix of staining in 17 body parts.
VDRC has 2 RNAi stocks for FBgn0024920 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head16 ± 31 of 4 0.10Down
Eye6 ± 10 of 4 0.04Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.02Down
Crop4 ± 10 of 4 0.00Down
Midgut27 ± 32 of 4 0.20Down
Tubule5 ± 20 of 4 0.00Down
Hindgut4 ± 20 of 4 0.00Down
Heart3 ± 00 of 4 0.02Down
Fat body16 ± 83 of 4 0.12Down
Ovary333 ± 84 of 4 2.30Up
Testis26 ± 14 of 4 0.20Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca9 ± 11 of 4 0.06Down
Mated spermatheca8 ± 11 of 4 0.06Down
Adult carcass16 ± 50 of 4 0.10Down
Larval CNS239 ± 34 of 4 1.68Up
Larval Salivary gland133 ± 114 of 4 0.94None
Larval midgut33 ± 54 of 4 0.24Down
Larval tubule10 ± 51 of 4 0.10Down
Larval hindgut64 ± 24 of 4 0.45Down
Larval fat body20 ± 30 of 4 0.10Down
Larval trachea121 ± 124 of 4 0.85Down
Larval carcass125 ± 114 of 4 0.88None
S2 cells (growing)251 ± 134 of 4 1.77Up
Whole fly142 ± 54 of 4

Looking for FBgn0024920. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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