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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024921 through 18771 annotations produced 1 hits



transportin (Trn):

Annotation Number : CG7398
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024921
Gbrowse : chr3L:6186583-6192105 (+) // 100.0 //
Probeset : 1624080_s_at
Accessions : protein= NP_477368; /// NP_729154; /// NP_729155;, nucleotide= NM_058020; /// NM_168160; /// NM_168161;
Pathway : engulfment // inferred from mutant phenotype"
Interpro : 0005643 // nuclear pore // inferred from sequence or structural similarity
FlyMine data for FBgn0024921.
BioGrid reports that CG7398 interacts with CG7815 CG9330 CG7425 CG8282 CG8396 .
TRiP has 1 RNAi stocks for FBgn0024921 available for purchase.
VDRC has 4 RNAi stocks for FBgn0024921 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain760 174 of 4 2.20Up
Head407 744 of 4 1.20None
Eye293 214 of 4 0.84None
Thoracicoabdominal ganglion635 564 of 4 1.80Up
Salivary gland279 614 of 4 0.80None
Crop540 314 of 4 1.50Up
Midgut386 214 of 4 1.10None
Tubule412 164 of 4 1.20Up
Hindgut570 194 of 4 1.60Up
Heart408 314 of 4 1.17None
Fat body449 1004 of 4 1.29None
Ovary961 314 of 4 2.80Up
Testis106 54 of 4 0.30Down
Male accessory glands398 204 of 4 1.10None
Virgin spermatheca325 204 of 4 0.93None
Mated spermatheca348 164 of 4 1.00None
Adult carcass303 424 of 4 0.90None
Larval CNS720 934 of 4 2.06Up
Larval Salivary gland883 744 of 4 2.53Up
Larval midgut357 424 of 4 1.02None
Larval tubule725 204 of 4 2.10Up
Larval hindgut515 264 of 4 1.48Up
Larval fat body302 164 of 4 0.90None
Larval trachea443 404 of 4 1.27None
Larval carcass545 664 of 4 1.56None
S2 cells (growing)306 114 of 4 0.88None
Whole fly349 414 of 4

Looking for FBgn0024921. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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