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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0024943 through 18771 annotations produced 1 hits

PIP82 (PIP82):

Annotation Number : CG11219
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024943
Gbrowse : chrX:8419549-8423558 (-) // 100.0 //
Probeset : 1641605_at
Accessions : protein= NP_572487;, nucleotide= NM_132259;
FlyMine data for FBgn0024943.
VDRC has 1 RNAi stocks for FBgn0024943 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 34 of 4 0.70None
Head367 374 of 412.60Up
Eye1937 1374 of 466.29Up
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland1 00 of 4 0.04Down
Crop5 10 of 4 0.20Down
Midgut0 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut112 24 of 4 3.80Up
Heart2 10 of 4 0.09Down
Fat body3 20 of 4 0.12Down
Ovary0 00 of 4 0.00Down
Testis2 00 of 4 0.10Down
Male accessory glands7 20 of 4 0.30Down
Virgin spermatheca0 00 of 4 0.02Down
Mated spermatheca0 00 of 4 0.02Down
Adult carcass2 10 of 4 0.10Down
Larval CNS0 00 of 4 0.01Down
Larval Salivary gland1 00 of 4 0.06Down
Larval midgut1 00 of 4 0.04Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut0 00 of 4 0.01Down
Larval fat body1 00 of 4 0.00Down
Larval trachea22 401 of 4 0.77None
Larval carcass0 00 of 4 0.02Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly29 34 of 4

Looking for FBgn0024943. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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