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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024945 through 18771 annotations produced 1 hits



NitFlit (NitFhit):

Annotation Number : CG7067
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024945
Gbrowse : chr3L:203698-205311 (+) // 100.0 //
Probeset : 1626557_at
Accessions : protein= NP_525122;, nucleotide= NM_080383;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from direct assay /// 0006807 // nitrogen compound metabolic
FlyMine data for FBgn0024945.
BDGP gene expression has embryonic in situ data for NitFhit: 6 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0024945 available for purchase.
VDRC has 2 RNAi stocks for FBgn0024945 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain125 ± 34 of 4 0.50Down
Head222 ± 94 of 4 0.90None
Eye188 ± 44 of 4 0.80Down
Thoracicoabdominal ganglion128 ± 24 of 4 0.50Down
Salivary gland262 ± 74 of 4 1.11Up
Crop278 ± 114 of 4 1.20Up
Midgut236 ± 44 of 4 1.00None
Tubule796 ± 924 of 4 3.40Up
Hindgut265 ± 54 of 4 1.10Up
Heart217 ± 34 of 4 0.93Down
Fat body266 ± 164 of 4 1.13Up
Ovary289 ± 54 of 4 1.20Up
Testis137 ± 44 of 4 0.60Down
Male accessory glands417 ± 184 of 4 1.80Up
Virgin spermatheca226 ± 84 of 4 0.96None
Mated spermatheca163 ± 104 of 4 0.69Down
Adult carcass256 ± 164 of 4 1.10None
Larval CNS168 ± 184 of 4 0.72Down
Larval Salivary gland243 ± 14 of 4 1.04Up
Larval midgut184 ± 74 of 4 0.78Down
Larval tubule724 ± 484 of 4 3.10Up
Larval hindgut195 ± 144 of 4 0.83None
Larval fat body634 ± 774 of 4 2.70Up
Larval trachea226 ± 234 of 4 0.96None
Larval carcass150 ± 164 of 4 0.64Down
S2 cells (growing)130 ± 84 of 4 0.56Down
Whole fly235 ± 24 of 4

Looking for FBgn0024945. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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