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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024957 through 18771 annotations produced 1 hits



cytosolic aconitase (Irp-1B):

Annotation Number : CG6342
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024957
Gbrowse : chr3R:6234336-6238638 (-) // 100.0 //
Probeset : 1640650_at
Accessions : protein= NP_524303;, nucleotide= NM_079579;
Interpro : "0003729 // mRNA binding // inferred from sequence or structural similarity /// 0003994 // aconitate hydratase activity
FlyMine data for FBgn0024957.
VDRC has 2 RNAi stocks for FBgn0024957 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain238 64 of 4 0.60Down
Head497 174 of 4 1.20Up
Eye352 554 of 4 0.82None
Thoracicoabdominal ganglion212 14 of 4 0.50Down
Salivary gland165 204 of 4 0.38Down
Crop965 264 of 4 2.20Up
Midgut711 434 of 4 1.60Up
Tubule791 394 of 4 1.80Up
Hindgut652 74 of 4 1.50Up
Heart1750 524 of 4 4.05Up
Fat body2148 1224 of 4 4.97Up
Ovary213 34 of 4 0.50Down
Testis36 14 of 4 0.10Down
Male accessory glands146 74 of 4 0.30Down
Virgin spermatheca1843 564 of 4 4.27Up
Mated spermatheca1490 844 of 4 3.45Up
Adult carcass1697 884 of 4 3.90Up
Larval CNS202 124 of 4 0.47Down
Larval Salivary gland227 44 of 4 0.53Down
Larval midgut581 444 of 4 1.35Up
Larval tubule945 464 of 4 2.20Up
Larval hindgut626 194 of 4 1.45Up
Larval fat body1483 1394 of 4 3.40Up
Larval trachea312 294 of 4 0.72Down
Larval carcass270 214 of 4 0.63Down
S2 cells (growing)272 54 of 4 0.63Down
Whole fly432 194 of 4

Looking for FBgn0024957. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime