FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0024963 through 18771 annotations produced 3 hits

indefinite (GluClalpha):

Annotation Number : CG7535
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024963
Gbrowse : chr3R:15556680-15601162 (+) // 99.78 //
Probeset : 1634465_a_at
Accessions : protein= NP_001014641; /// NP_001034061; /// NP_001163654; /// NP_001163655; /// NP_001163656; /// NP_650827; /// NP_732447;, nucleotide= NM_001014641; /// NM_001038972; /// NM_001170183; /// NM_001170184; /// NM_001170185; /// NM_142570; /// NM_169873;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic anno
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from
FlyMine data for FBgn0024963.
Homophila reports that CG7535 is a close match (7e-11) to human gene ACHRD;CHRND;CMS2A;FCCMS;SCCMS (NP_000742), a gene associated with Multiple pterygium syndrome, lethal type, 253290 (3);Myasthenic syndrome, fast-channel congenital, 608930 (3);Myasthenic syndrome, slow-channel congenital, 601462 (3).
VDRC has 1 RNAi stocks for FBgn0024963 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	232 ± 2	4 of 4	20.30	Up
Head	52 ± 1	4 of 4	4.60	Up
Eye	83 ± 3	4 of 4	7.30	Up
Thoracicoabdominal ganglion	138 ± 20	4 of 4	12.00	Up
Salivary gland	10 ± 2	0 of 4	0.95	None
Crop	8 ± 2	2 of 4	0.70	None
Midgut	5 ± 1	0 of 4	0.50	Down
Tubule	7 ± 0	1 of 4	0.70	Down
Hindgut	5 ± 0	0 of 4	0.50	Down
Heart	10 ± 1	4 of 4	0.93	None
Fat body	9 ± 2	1 of 4	0.79	None
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	5 ± 1	0 of 4	0.50	Down
Male accessory glands	5 ± 2	0 of 4	0.50	None
Virgin spermatheca	5 ± 1	1 of 4	0.47	Down
Mated spermatheca	4 ± 0	0 of 4	0.35	Down
Adult carcass	23 ± 3	4 of 4	2.10	Up
Larval CNS	47 ± 3	4 of 4	4.17	Up
Larval Salivary gland	3 ± 1	0 of 4	0.32	Down
Larval midgut	5 ± 0	0 of 4	0.49	Down
Larval tubule	2 ± 0	0 of 4	0.20	Down
Larval hindgut	4 ± 0	1 of 4	0.41	Down
Larval fat body	2 ± 0	0 of 4	0.20	Down
Larval trachea	5 ± 1	1 of 4	0.52	Down
Larval carcass	6 ± 1	1 of 4	0.52	Down
S2 cells (growing)	4 ± 0	1 of 4	0.39	Down
Whole fly	11 ± 0	4 of 4

indefinite (GluClalpha):

Annotation Number : CG7535
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024963
Gbrowse : chr3R:15556680-15595607 (+) // 100.0 //
Probeset : 1630897_at
Accessions : protein= NP_001014641; /// NP_001034061; /// NP_001163654; /// NP_001163655; /// NP_001163656; /// NP_650827; /// NP_732447;, nucleotide= NM_001014641; /// NM_001038972; /// NM_001170183; /// NM_001170184; /// NM_001170185; /// NM_142570; /// NM_169873;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic anno
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from
FlyMine data for FBgn0024963.
Homophila reports that CG7535 is a close match (7e-11) to human gene ACHRD;CHRND;CMS2A;FCCMS;SCCMS (NP_000742), a gene associated with Multiple pterygium syndrome, lethal type, 253290 (3);Myasthenic syndrome, fast-channel congenital, 608930 (3);Myasthenic syndrome, slow-channel congenital, 601462 (3).
VDRC has 1 RNAi stocks for FBgn0024963 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	621 ± 35	4 of 4	49.20	Up
Head	36 ± 2	4 of 4	2.90	Up
Eye	15 ± 2	4 of 4	1.22	None
Thoracicoabdominal ganglion	371 ± 23	4 of 4	29.40	Up
Salivary gland	4 ± 1	0 of 4	0.33	Down
Crop	4 ± 1	0 of 4	0.30	Down
Midgut	0 ± 0	0 of 4	0.00	Down
Tubule	1 ± 0	0 of 4	0.10	Down
Hindgut	4 ± 1	1 of 4	0.30	Down
Heart	6 ± 2	2 of 4	0.52	None
Fat body	7 ± 2	1 of 4	0.62	None
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	1 ± 0	0 of 4	0.10	Down
Male accessory glands	1 ± 0	0 of 4	0.10	Down
Virgin spermatheca	4 ± 1	0 of 4	0.32	Down
Mated spermatheca	3 ± 0	0 of 4	0.23	Down
Adult carcass	26 ± 5	3 of 4	2.10	None
Larval CNS	123 ± 35	4 of 4	9.77	Up
Larval Salivary gland	1 ± 0	0 of 4	0.14	Down
Larval midgut	0 ± 0	0 of 4	0.01	Down
Larval tubule	1 ± 0	0 of 4	0.10	Down
Larval hindgut	1 ± 0	0 of 4	0.08	Down
Larval fat body	4 ± 1	0 of 4	0.30	Down
Larval trachea	0 ± 0	0 of 4	0.03	Down
Larval carcass	0 ± 0	0 of 4	0.08	Down
S2 cells (growing)	0 ± 0	0 of 4	0.03	Down
Whole fly	12 ± 2	4 of 4

indefinite (GluClalpha):

Annotation Number : CG7535
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024963
Gbrowse : chr3R:15556680-15601162 (+) // 99.78 //
Probeset : 1639735_at
Accessions : protein= NP_001014641; /// NP_001034061; /// NP_001163654; /// NP_001163655; /// NP_001163656; /// NP_650827; /// NP_732447;, nucleotide= NM_001014641; /// NM_001038972; /// NM_001170183; /// NM_001170184; /// NM_001170185; /// NM_142570; /// NM_169873;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic anno
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0005216 // ion channel activity // inferred from
FlyMine data for FBgn0024963.
Homophila reports that CG7535 is a close match (7e-11) to human gene ACHRD;CHRND;CMS2A;FCCMS;SCCMS (NP_000742), a gene associated with Multiple pterygium syndrome, lethal type, 253290 (3);Myasthenic syndrome, fast-channel congenital, 608930 (3);Myasthenic syndrome, slow-channel congenital, 601462 (3).
VDRC has 1 RNAi stocks for FBgn0024963 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	5.00	None
Head	3 ± 1	0 of 4	8.10	None
Eye	2 ± 0	0 of 4	5.00	None
Thoracicoabdominal ganglion	4 ± 1	0 of 4	9.70	None
Salivary gland	10 ± 6	0 of 4	21.95	None
Crop	1 ± 0	0 of 4	2.10	None
Midgut	2 ± 0	0 of 4	4.80	None
Tubule	3 ± 0	0 of 4	7.70	Up
Hindgut	1 ± 0	0 of 4	3.80	None
Heart	0 ± 0	0 of 4	1.26	None
Fat body	10 ± 3	0 of 4	21.16	Up
Ovary	1 ± 0	0 of 4	2.80	None
Testis	1 ± 0	0 of 4	3.40	None
Male accessory glands	1 ± 0	0 of 4	3.90	None
Virgin spermatheca	3 ± 1	0 of 4	6.63	None
Mated spermatheca	2 ± 0	0 of 4	5.47	Up
Adult carcass	2 ± 0	0 of 4	4.10	None
Larval CNS	3 ± 1	0 of 4	7.37	Up
Larval Salivary gland	7 ± 1	0 of 4	14.84	Up
Larval midgut	1 ± 1	0 of 4	3.37	None
Larval tubule	2 ± 1	0 of 4	4.90	None
Larval hindgut	1 ± 0	0 of 4	2.05	None
Larval fat body	0 ± 0	0 of 4	1.80	None
Larval trachea	0 ± 0	0 of 4	1.42	None
Larval carcass	1 ± 0	0 of 4	2.32	Up
S2 cells (growing)	1 ± 0	0 of 4	2.26	None
Whole fly	0 ± 0	0 of 4

Looking for FBgn0024963. 3 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720