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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024980 through 18771 annotations produced 1 hits



syntaxin (Syx4):

Annotation Number : CG2715
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024980
Gbrowse : chrX:2633119-2638099 (-) // 100.0 //
Probeset : 1638808_at
Accessions : protein= NP_525057;, nucleotide= NM_080318;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005886 // plasma membrane // inferred from
Interpro : 0005484 // SNAP receptor activity // inferred from sequence or structural similarity /// 0005515 // protein binding // i
FlyMine data for FBgn0024980.
BioGrid reports that CG2715 interacts with CG7379 CG9474 CG3021 CG6223 .
TRiP has 2 RNAi stocks for FBgn0024980 available for purchase.
VDRC has 2 RNAi stocks for FBgn0024980 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain61 ± 34 of 4 1.80Up
Head62 ± 74 of 4 1.80Up
Eye130 ± 84 of 4 3.82Up
Thoracicoabdominal ganglion58 ± 14 of 4 1.70Up
Salivary gland70 ± 44 of 4 2.07Up
Crop8 ± 20 of 4 0.20Down
Midgut156 ± 74 of 4 4.60Up
Tubule209 ± 84 of 4 6.10Up
Hindgut237 ± 144 of 4 7.00Up
Heart46 ± 24 of 4 1.37Up
Fat body89 ± 104 of 4 2.61Up
Ovary10 ± 14 of 4 0.30Down
Testis54 ± 34 of 4 1.60Up
Male accessory glands12 ± 31 of 4 0.40Down
Virgin spermatheca66 ± 24 of 4 1.95Up
Mated spermatheca56 ± 34 of 4 1.67Up
Adult carcass44 ± 24 of 4 1.30Up
Larval CNS22 ± 14 of 4 0.65Down
Larval Salivary gland1 ± 00 of 4 0.03Down
Larval midgut98 ± 154 of 4 2.89Up
Larval tubule33 ± 14 of 4 1.00None
Larval hindgut105 ± 74 of 4 3.09Up
Larval fat body32 ± 34 of 4 0.90None
Larval trachea51 ± 114 of 4 1.49None
Larval carcass20 ± 33 of 4 0.59Down
S2 cells (growing)70 ± 84 of 4 2.05Up
Whole fly34 ± 14 of 4

Looking for FBgn0024980. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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