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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024983 through 18771 annotations produced 1 hits



(CG4293):

Annotation Number : CG4293
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024983
Gbrowse : chrX:421973-423885 (-) // 99.76 //
Probeset : 1624656_s_at
Accessions : protein= NP_001033816; /// NP_001033817; /// NP_569847; /// NP_726677;, nucleotide= NM_001038727; /// NM_001038728; /// NM_130491; /// NM_166847;
Interpro : 0004053 // arginase activity // inferred from sequence or structural similarity /// 0004053 // arginase activity // infe
FlyMine data for FBgn0024983.
VDRC has 2 RNAi stocks for FBgn0024983 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain86 24 of 4 0.90None
Head69 24 of 4 0.70Down
Eye63 24 of 4 0.66Down
Thoracicoabdominal ganglion84 44 of 4 0.90None
Salivary gland387 124 of 4 4.03Up
Crop63 14 of 4 0.70Down
Midgut33 24 of 4 0.40Down
Tubule90 114 of 4 0.90None
Hindgut52 24 of 4 0.50Down
Heart65 14 of 4 0.68Down
Fat body74 64 of 4 0.77Down
Ovary162 24 of 4 1.70Up
Testis57 24 of 4 0.60Down
Male accessory glands814 284 of 4 8.50Up
Virgin spermatheca90 54 of 4 0.94None
Mated spermatheca99 34 of 4 1.03None
Adult carcass69 14 of 4 0.70Down
Larval CNS140 104 of 4 1.46Up
Larval Salivary gland1588 1214 of 416.50Up
Larval midgut38 44 of 4 0.40Down
Larval tubule91 14 of 4 0.90None
Larval hindgut67 44 of 4 0.70Down
Larval fat body106 104 of 4 1.10None
Larval trachea133 254 of 4 1.39None
Larval carcass110 44 of 4 1.14None
S2 cells (growing)179 34 of 4 1.87Up
Whole fly96 44 of 4

Looking for FBgn0024983. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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