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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0024984 through 18771 annotations produced 1 hits


Annotation Number : CG3457
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024984
Gbrowse : chrX:2081854-2082748 (+) // 100.0 //
Probeset : 1623025_at
Accessions : protein= NP_569985;, nucleotide= NM_130629;
FlyMine data for FBgn0024984.
BDGP gene expression has embryonic in situ data for EG:17E2.1: 4 pix of staining in 1 body parts.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10Down
Head3 10 of 4 0.20Down
Eye2 10 of 4 0.09Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland4 10 of 4 0.23Down
Crop1 00 of 4 0.10Down
Midgut4 00 of 4 0.20Down
Tubule4 10 of 4 0.20Down
Hindgut5 20 of 4 0.20Down
Heart2 00 of 4 0.09Down
Fat body3 30 of 4 0.18Down
Ovary39 54 of 4 1.80Up
Testis1 00 of 4 0.10Down
Male accessory glands10 10 of 4 0.50None
Virgin spermatheca5 00 of 4 0.27Down
Mated spermatheca2 00 of 4 0.12Down
Adult carcass10 40 of 4 0.50None
Larval CNS1 00 of 4 0.08Down
Larval Salivary gland4 20 of 4 0.22Down
Larval midgut11 30 of 4 0.53None
Larval tubule4 10 of 4 0.20Down
Larval hindgut13 12 of 4 0.63None
Larval fat body5 10 of 4 0.20Down
Larval trachea11 33 of 4 0.53None
Larval carcass10 00 of 4 0.47None
S2 cells (growing)52 24 of 4 2.43Up
Whole fly21 42 of 4

Looking for FBgn0024984. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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