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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024985 through 18771 annotations produced 1 hits



(CG11448):

Annotation Number : CG11448
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024985
Gbrowse : chrX:1287097-1291371 (+) // 100.0 //
Probeset : 1624881_at
Accessions : protein= NP_569910;, nucleotide= NM_130554;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0024985.
BDGP gene expression has embryonic in situ data for EG:132E8.4: 12 pix of staining in 6 body parts.
BioGrid reports that CG11448 interacts with CG17994 CG7206 CG7357 CG8145 CG8383 CG13843 CG2930 .
TRiP has 1 RNAi stocks for FBgn0024985 available for purchase.
VDRC has 2 RNAi stocks for FBgn0024985 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain875 ± 484 of 413.20Up
Head211 ± 194 of 4 3.20Up
Eye236 ± 154 of 4 3.58Up
Thoracicoabdominal ganglion839 ± 444 of 412.70Up
Salivary gland221 ± 164 of 4 3.35Up
Crop141 ± 54 of 4 2.10Up
Midgut83 ± 34 of 4 1.30Up
Tubule63 ± 24 of 4 1.00None
Hindgut227 ± 104 of 4 3.40Up
Heart61 ± 44 of 4 0.93None
Fat body31 ± 34 of 4 0.48Down
Ovary29 ± 14 of 4 0.50Down
Testis23 ± 04 of 4 0.40Down
Male accessory glands177 ± 54 of 4 2.70Up
Virgin spermatheca93 ± 44 of 4 1.41Up
Mated spermatheca125 ± 164 of 4 1.89Up
Adult carcass88 ± 34 of 4 1.30Up
Larval CNS192 ± 104 of 4 2.91Up
Larval Salivary gland69 ± 64 of 4 1.06None
Larval midgut75 ± 14 of 4 1.15None
Larval tubule74 ± 14 of 4 1.10None
Larval hindgut104 ± 54 of 4 1.57Up
Larval fat body24 ± 13 of 4 0.40Down
Larval trachea187 ± 224 of 4 2.83Up
Larval carcass72 ± 34 of 4 1.09None
S2 cells (growing)141 ± 34 of 4 2.14Up
Whole fly66 ± 34 of 4

Looking for FBgn0024985. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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