FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0024987 through 18771 annotations produced 1 hits

(CG3056):

Annotation Number : CG3056
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024987
Gbrowse : chrX:1264598-1268773 (+) // 100.0 //
Probeset : 1627150_at
Accessions : protein= NP_569908; /// NP_996326;, nucleotide= NM_130552; /// NM_206603;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0024987.
BioGrid reports that CG3056 interacts with CG7447 CG8854 CG8942 CG3075 CG31000 CG31839 CG3922 Dmel CG34168 CG4963 CG5669 CG5804 CG8068 CG8697 CG9572 CG9666 CG32581 CG8974 .
VDRC has 1 RNAi stocks for FBgn0024987 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	490 ± 15	4 of 4	3.20	Up
Head	193 ± 9	4 of 4	1.30	Up
Eye	308 ± 21	4 of 4	2.01	Up
Thoracicoabdominal ganglion	285 ± 4	4 of 4	1.90	Up
Salivary gland	322 ± 5	4 of 4	2.11	Up
Crop	173 ± 4	4 of 4	1.10	None
Midgut	123 ± 4	4 of 4	0.80	None
Tubule	134 ± 9	4 of 4	0.90	None
Hindgut	163 ± 4	4 of 4	1.10	None
Heart	139 ± 3	4 of 4	0.91	None
Fat body	97 ± 6	4 of 4	0.64	Down
Ovary	357 ± 5	4 of 4	2.30	Up
Testis	69 ± 6	4 of 4	0.50	Down
Male accessory glands	306 ± 5	4 of 4	2.00	Up
Virgin spermatheca	117 ± 2	4 of 4	0.77	Down
Mated spermatheca	117 ± 7	4 of 4	0.76	Down
Adult carcass	112 ± 5	4 of 4	0.70	Down
Larval CNS	488 ± 37	4 of 4	3.18	Up
Larval Salivary gland	231 ± 5	4 of 4	1.51	Up
Larval midgut	124 ± 2	4 of 4	0.81	None
Larval tubule	145 ± 5	4 of 4	0.90	None
Larval hindgut	188 ± 3	4 of 4	1.23	Up
Larval fat body	139 ± 6	4 of 4	0.90	None
Larval trachea	288 ± 30	4 of 4	1.88	Up
Larval carcass	200 ± 4	4 of 4	1.31	Up
S2 cells (growing)	365 ± 9	4 of 4	2.38	Up
Whole fly	153 ± 11	4 of 4

Looking for FBgn0024987. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720