FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0024989 through 18771 annotations produced 2 hits

(CG3777):

Annotation Number : S.CX000012
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024989
Gbrowse : chrX:240181-240470 (+) // 95.38 //
Probeset : 1624178_s_at
Accessions : protein= NP_569839; /// NP_726664; /// NP_726665;, nucleotide= NM_130483; /// NM_166840; /// NM_166841;
FlyMine data for FBgn0024989.
BDGP gene expression has embryonic in situ data for EG:125H10.1: 35 pix of staining in 9 body parts.
VDRC has 2 RNAi stocks for FBgn0024989 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	1 of 4	0.80	None
Head	4 ± 0	0 of 4	1.10	None
Eye	5 ± 0	0 of 4	1.52	None
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.90	None
Salivary gland	9 ± 2	0 of 4	2.43	None
Crop	2 ± 0	0 of 4	0.70	None
Midgut	2 ± 0	0 of 4	0.60	None
Tubule	3 ± 1	0 of 4	0.80	None
Hindgut	6 ± 0	0 of 4	1.80	None
Heart	2 ± 0	0 of 4	0.74	None
Fat body	3 ± 2	0 of 4	1.03	None
Ovary	2 ± 0	0 of 4	0.60	None
Testis	1 ± 0	0 of 4	0.40	None
Male accessory glands	6 ± 2	0 of 4	1.70	None
Virgin spermatheca	2 ± 0	0 of 4	0.55	None
Mated spermatheca	3 ± 0	0 of 4	1.02	None
Adult carcass	5 ± 1	0 of 4	1.50	None
Larval CNS	3 ± 0	0 of 4	0.81	None
Larval Salivary gland	4 ± 2	0 of 4	1.26	None
Larval midgut	5 ± 0	0 of 4	1.54	None
Larval tubule	3 ± 1	0 of 4	0.90	None
Larval hindgut	7 ± 1	4 of 4	1.91	None
Larval fat body	1 ± 0	0 of 4	0.30	None
Larval trachea	38 ± 9	4 of 4	10.37	Up
Larval carcass	48 ± 8	4 of 4	13.13	Up
S2 cells (growing)	5 ± 0	0 of 4	1.50	None
Whole fly	3 ± 2	0 of 4

(CG3777):

Annotation Number : CG3777
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024989
Gbrowse : chrX:173735-244237 (+) // 100.0 //
Probeset : 1637077_s_at
Accessions : protein= NP_569839; /// NP_726664; /// NP_726665;, nucleotide= NM_130483; /// NM_166840; /// NM_166841;
FlyMine data for FBgn0024989.
BDGP gene expression has embryonic in situ data for EG:125H10.1: 35 pix of staining in 9 body parts.
VDRC has 2 RNAi stocks for FBgn0024989 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	11 ± 1	4 of 4	0.40	None
Head	22 ± 2	4 of 4	0.80	None
Eye	50 ± 15	4 of 4	1.89	None
Thoracicoabdominal ganglion	5 ± 2	0 of 4	0.20	Down
Salivary gland	24 ± 2	1 of 4	0.92	None
Crop	8 ± 1	0 of 4	0.30	Down
Midgut	7 ± 2	0 of 4	0.30	Down
Tubule	4 ± 0	0 of 4	0.20	Down
Hindgut	32 ± 3	4 of 4	1.20	None
Heart	17 ± 3	4 of 4	0.67	None
Fat body	19 ± 0	4 of 4	0.72	None
Ovary	9 ± 0	2 of 4	0.40	Down
Testis	9 ± 1	3 of 4	0.40	Down
Male accessory glands	23 ± 8	0 of 4	0.90	None
Virgin spermatheca	12 ± 1	0 of 4	0.48	None
Mated spermatheca	15 ± 4	1 of 4	0.57	None
Adult carcass	37 ± 1	3 of 4	1.40	None
Larval CNS	26 ± 4	4 of 4	0.99	None
Larval Salivary gland	73 ± 5	4 of 4	2.74	Up
Larval midgut	39 ± 1	4 of 4	1.50	None
Larval tubule	9 ± 3	1 of 4	0.30	Down
Larval hindgut	202 ± 24	4 of 4	7.60	Up
Larval fat body	8 ± 1	0 of 4	0.30	Down
Larval trachea	3183 ± 362	4 of 4	119.45	Up
Larval carcass	2455 ± 253	4 of 4	92.13	Up
S2 cells (growing)	10 ± 0	3 of 4	0.39	Down
Whole fly	26 ± 4	4 of 4

Looking for FBgn0024989. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720