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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024994 through 18771 annotations produced 1 hits



D.melanogaster nucleotide sugar transporter (Csat):

Annotation Number : CG2675
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024994
Gbrowse : chrX:2595149-2597809 (-) // 100.0 //
Probeset : 1639215_at
Accessions : protein= NP_001138149; /// NP_570019;, nucleotide= NM_001144677; /// NM_130663;
Pathway : 0000139 // Golgi membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic ann
Interpro : 0005338 // nucleotide-sugar transmembrane transporter activity // inferred from electronic annotation /// 0005351 // sug
FlyMine data for FBgn0024994.
Homophila reports that CG2675 is a close match (2e-60) to human gene CST;SLC35A1 (NP_006407), a gene associated with Congenital disorder of glycosylation, type IIf, 603585 (3).
BioGrid reports that CG2675 interacts with CG33017 CG33213 CG8219 .
TRiP has 1 RNAi stocks for FBgn0024994 available for purchase.
VDRC has 2 RNAi stocks for FBgn0024994 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 24 of 4 0.60Down
Head77 74 of 4 0.40Down
Eye42 34 of 4 0.22Down
Thoracicoabdominal ganglion86 34 of 4 0.40Down
Salivary gland1398 544 of 4 7.25Up
Crop75 34 of 4 0.40Down
Midgut324 124 of 4 1.70Up
Tubule209 174 of 4 1.10None
Hindgut101 44 of 4 0.50Down
Heart72 34 of 4 0.38Down
Fat body72 94 of 4 0.38Down
Ovary356 84 of 4 1.80Up
Testis28 04 of 4 0.10Down
Male accessory glands1623 764 of 4 8.40Up
Virgin spermatheca574 524 of 4 2.98Up
Mated spermatheca641 864 of 4 3.32Up
Adult carcass70 34 of 4 0.40Down
Larval CNS182 164 of 4 0.94None
Larval Salivary gland2397 494 of 412.42Up
Larval midgut339 214 of 4 1.76Up
Larval tubule308 64 of 4 1.60Up
Larval hindgut242 54 of 4 1.26Up
Larval fat body122 124 of 4 0.60Down
Larval trachea210 374 of 4 1.09None
Larval carcass302 274 of 4 1.57Up
S2 cells (growing)555 154 of 4 2.88Up
Whole fly193 104 of 4

Looking for FBgn0024994. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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