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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024996 through 18771 annotations produced 1 hits



eIF2B-beta (eIF2B-beta):

Annotation Number : CG2677
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024996
Gbrowse : chrX:2598608-2600099 (+) // 100.0 //
Probeset : 1630395_at
Accessions : protein= NP_570020;, nucleotide= NM_130664;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity /// 0005851 // eukaryotic translation initiation f
Interpro : 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0003743 // tran
FlyMine data for FBgn0024996.
Homophila reports that CG2677 is a close match (2e-12) to human gene EIF2B1;EIF2BA (NP_001405), a gene associated with Leukoencephalopathy with vanishing white matter, 603896 (3).
BioGrid reports that CG2677 interacts with CG9638 .
TRiP has 1 RNAi stocks for FBgn0024996 available for purchase.
VDRC has 2 RNAi stocks for FBgn0024996 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain201 54 of 4 1.50Up
Head159 44 of 4 1.20None
Eye297 84 of 4 2.21Up
Thoracicoabdominal ganglion173 54 of 4 1.30Up
Salivary gland221 84 of 4 1.64Up
Crop139 44 of 4 1.00None
Midgut176 44 of 4 1.30Up
Tubule163 104 of 4 1.20Up
Hindgut181 74 of 4 1.30Up
Heart132 14 of 4 0.99None
Fat body128 184 of 4 0.95None
Ovary159 54 of 4 1.20None
Testis56 34 of 4 0.40Down
Male accessory glands235 84 of 4 1.70Up
Virgin spermatheca84 34 of 4 0.63Down
Mated spermatheca97 34 of 4 0.72Down
Adult carcass137 104 of 4 1.00None
Larval CNS177 64 of 4 1.31Up
Larval Salivary gland377 164 of 4 2.80Up
Larval midgut98 14 of 4 0.73Down
Larval tubule193 94 of 4 1.40Up
Larval hindgut122 34 of 4 0.91None
Larval fat body183 154 of 4 1.40Up
Larval trachea212 244 of 4 1.58Up
Larval carcass162 64 of 4 1.20Up
S2 cells (growing)251 84 of 4 1.86Up
Whole fly134 84 of 4

Looking for FBgn0024996. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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