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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0024998 through 18771 annotations produced 1 hits



(CG2685):

Annotation Number : CG2685
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024998
Gbrowse : chrX:2605780-2607990 (-) // 100.0 //
Probeset : 1629864_at
Accessions : protein= NP_570023;, nucleotide= NM_130667;
Pathway : via spliceosome // inferred by curator /// 0006396 // RNA processing // inferred from electronic annotation"
Interpro : 0071011 // precatalytic spliceosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferre
FlyMine data for FBgn0024998.
BioGrid reports that CG2685 interacts with CG4887 .
VDRC has 2 RNAi stocks for FBgn0024998 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 34 of 4 1.20Up
Head35 34 of 4 0.60Down
Eye36 14 of 4 0.61Down
Thoracicoabdominal ganglion73 24 of 4 1.20Up
Salivary gland69 94 of 4 1.17None
Crop51 14 of 4 0.90None
Midgut23 24 of 4 0.40Down
Tubule33 14 of 4 0.60Down
Hindgut33 14 of 4 0.60Down
Heart20 14 of 4 0.35Down
Fat body29 64 of 4 0.48Down
Ovary125 04 of 4 2.10Up
Testis28 14 of 4 0.50Down
Male accessory glands68 64 of 4 1.10None
Virgin spermatheca36 24 of 4 0.62Down
Mated spermatheca39 14 of 4 0.66Down
Adult carcass41 54 of 4 0.70Down
Larval CNS83 34 of 4 1.40Up
Larval Salivary gland59 14 of 4 1.00None
Larval midgut28 24 of 4 0.47Down
Larval tubule48 24 of 4 0.80Down
Larval hindgut32 14 of 4 0.54Down
Larval fat body32 34 of 4 0.50Down
Larval trachea32 54 of 4 0.54Down
Larval carcass38 44 of 4 0.65Down
S2 cells (growing)80 54 of 4 1.35Up
Whole fly59 34 of 4

Looking for FBgn0024998. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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