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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025115 through 18771 annotations produced 1 hits



acylphosphatase (Acyp):

Annotation Number : CG16870
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025115
Gbrowse : chr2L:13912200-13912563 (+) // 100.0 //
Probeset : 1639745_at
Accessions : protein= NP_523563;, nucleotide= NM_078839;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation
Interpro : 0003998 // acylphosphatase activity // inferred from direct assay /// 0003998 // acylphosphatase activity // inferred fr
FlyMine data for FBgn0025115.
BioGrid reports that CG16870 interacts with CG7742 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10Down
Head6 20 of 4 0.10Down
Eye1 00 of 4 0.03Down
Thoracicoabdominal ganglion7 20 of 4 0.20Down
Salivary gland2 00 of 4 0.05Down
Crop8 10 of 4 0.20Down
Midgut10 30 of 4 0.20Down
Tubule4 00 of 4 0.10Down
Hindgut3 10 of 4 0.10Down
Heart5 10 of 4 0.10Down
Fat body9 60 of 4 0.20Down
Ovary4 20 of 4 0.10Down
Testis509 234 of 410.20Up
Male accessory glands4 30 of 4 0.10Down
Virgin spermatheca14 20 of 4 0.28Down
Mated spermatheca12 10 of 4 0.25Down
Adult carcass6 20 of 4 0.10Down
Larval CNS5 10 of 4 0.11Down
Larval Salivary gland7 30 of 4 0.14Down
Larval midgut13 20 of 4 0.27Down
Larval tubule5 10 of 4 0.10Down
Larval hindgut1 00 of 4 0.04Down
Larval fat body37 91 of 4 0.70None
Larval trachea6 30 of 4 0.12Down
Larval carcass2 00 of 4 0.04Down
S2 cells (growing)4 10 of 4 0.09Down
Whole fly50 24 of 4

Looking for FBgn0025115. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime