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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025186 through 18771 annotations produced 1 hits



ariadne-2 (ari-2):

Annotation Number : CG5709
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025186
Gbrowse : chr2R:18100345-18104769 (+) // 100.0 //
Probeset : 1625556_at
Accessions : protein= NP_477374;, nucleotide= NM_058026;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004842 // ubiquitin-protein ligase activity
FlyMine data for FBgn0025186.
BioGrid reports that CG5709 interacts with CG5788 CG6770 CG6779 CG7262 CG7266 CG7436 CG7937 CG8171 CG9423 .
TRiP has 1 RNAi stocks for FBgn0025186 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain213 64 of 4 1.10Up
Head149 74 of 4 0.80Down
Eye270 84 of 4 1.42Up
Thoracicoabdominal ganglion210 44 of 4 1.10None
Salivary gland114 64 of 4 0.60Down
Crop145 64 of 4 0.80Down
Midgut84 34 of 4 0.40Down
Tubule117 24 of 4 0.60Down
Hindgut96 34 of 4 0.50Down
Heart81 54 of 4 0.43Down
Fat body56 94 of 4 0.30Down
Ovary445 64 of 4 2.30Up
Testis62 24 of 4 0.30Down
Male accessory glands105 34 of 4 0.60Down
Virgin spermatheca136 24 of 4 0.72Down
Mated spermatheca116 84 of 4 0.61Down
Adult carcass94 44 of 4 0.50Down
Larval CNS365 364 of 4 1.92Up
Larval Salivary gland201 84 of 4 1.06None
Larval midgut125 154 of 4 0.66Down
Larval tubule295 104 of 4 1.60Up
Larval hindgut115 124 of 4 0.61Down
Larval fat body213 134 of 4 1.10None
Larval trachea144 94 of 4 0.76Down
Larval carcass148 84 of 4 0.78Down
S2 cells (growing)69 34 of 4 0.37Down
Whole fly190 104 of 4

Looking for FBgn0025186. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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