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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025286 through 18771 annotations produced 1 hits



Ribosomal protein L31 (RpL31):

Annotation Number : CG1821
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025286
Gbrowse : chr2R:5474687-5475487 (+) // 98.84 //
Probeset : 1628928_s_at
Accessions : protein= NP_610503; /// NP_724804; /// NP_724805;, nucleotide= NM_136659; /// NM_165682; /// NM_165683;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0025286.
BioGrid reports that CG1821 interacts with CG2116 CG2246 CG2984 CG3847 CG4162 CG4818 CG4835 CG5017 CG7928 CG7987 CG8364 CG8414 .
TRiP has 1 RNAi stocks for FBgn0025286 available for purchase.
VDRC has 2 RNAi stocks for FBgn0025286 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3432 ± 704 of 4 0.90None
Head4758 ± 2354 of 4 1.20None
Eye6231 ± 854 of 4 1.55Up
Thoracicoabdominal ganglion4453 ± 1174 of 4 1.10None
Salivary gland10489 ± 3504 of 4 2.61Up
Crop5986 ± 3564 of 4 1.50Up
Midgut5019 ± 614 of 4 1.20Up
Tubule4668 ± 794 of 4 1.20Up
Hindgut4804 ± 464 of 4 1.20Up
Heart6555 ± 4824 of 4 1.63Up
Fat body5639 ± 6944 of 4 1.40Up
Ovary3577 ± 404 of 4 0.90None
Testis1129 ± 184 of 4 0.30Down
Male accessory glands8425 ± 1984 of 4 2.10Up
Virgin spermatheca4887 ± 2644 of 4 1.22Up
Mated spermatheca4988 ± 1834 of 4 1.24Up
Adult carcass5559 ± 2734 of 4 1.40Up
Larval CNS2755 ± 1764 of 4 0.69Down
Larval Salivary gland7621 ± 3644 of 4 1.90Up
Larval midgut4694 ± 1014 of 4 1.17Up
Larval tubule4797 ± 514 of 4 1.20Up
Larval hindgut4296 ± 334 of 4 1.07None
Larval fat body7874 ± 8834 of 4 2.00Up
Larval trachea5840 ± 3044 of 4 1.45Up
Larval carcass4751 ± 3444 of 4 1.18None
S2 cells (growing)4426 ± 704 of 4 1.10None
Whole fly4018 ± 1934 of 4

Looking for FBgn0025286. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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