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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025335 through 18771 annotations produced 1 hits



undefined 2 (CG4585):

Annotation Number : CG4585
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025335
Gbrowse : chr2R:19750481-19752917 (-) // 100.0 //
Probeset : 1638874_at
Accessions : protein= NP_477376;, nucleotide= NM_058028;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : "0016780 // phosphotransferase activity
FlyMine data for FBgn0025335.
BioGrid reports that CG4585 interacts with CG5618 .
TRiP has 1 RNAi stocks for FBgn0025335 available for purchase.
VDRC has 3 RNAi stocks for FBgn0025335 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain172 ± 84 of 4 0.70Down
Head194 ± 64 of 4 0.70Down
Eye245 ± 54 of 4 0.93None
Thoracicoabdominal ganglion184 ± 64 of 4 0.70Down
Salivary gland187 ± 174 of 4 0.71Down
Crop270 ± 84 of 4 1.00None
Midgut437 ± 114 of 4 1.70Up
Tubule280 ± 214 of 4 1.10None
Hindgut394 ± 104 of 4 1.50Up
Heart398 ± 84 of 4 1.52Up
Fat body367 ± 334 of 4 1.40Up
Ovary611 ± 104 of 4 2.30Up
Testis94 ± 14 of 4 0.40Down
Male accessory glands178 ± 54 of 4 0.70Down
Virgin spermatheca475 ± 234 of 4 1.81Up
Mated spermatheca371 ± 134 of 4 1.41Up
Adult carcass264 ± 84 of 4 1.00None
Larval CNS150 ± 64 of 4 0.57Down
Larval Salivary gland200 ± 154 of 4 0.76Down
Larval midgut583 ± 64 of 4 2.22Up
Larval tubule323 ± 74 of 4 1.20Up
Larval hindgut390 ± 124 of 4 1.48Up
Larval fat body226 ± 144 of 4 0.90None
Larval trachea190 ± 24 of 4 0.72Down
Larval carcass304 ± 144 of 4 1.16None
S2 cells (growing)394 ± 24 of 4 1.50Up
Whole fly262 ± 64 of 4

Looking for FBgn0025335. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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