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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0025383 through 18771 annotations produced 1 hits


Annotation Number : CG14780
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025383
Gbrowse : chrX:1366557-1367760 (+) // 100.0 //
Probeset : 1625712_at
Accessions : protein= NP_569920;, nucleotide= NM_130564;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0025383.
Homophila reports that CG14780 is a close match (6e-12) to human gene C1S (NP_958850), a gene associated with C1r/C1s deficiency, combined (1);C1s deficiency, isolated (3).
VDRC has 2 RNAi stocks for FBgn0025383 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20None
Head1 00 of 4 0.10None
Eye2 00 of 4 0.28None
Thoracicoabdominal ganglion1 00 of 4 0.10None
Salivary gland6 30 of 4 0.78None
Crop2 00 of 4 0.30None
Midgut51 64 of 4 6.20Up
Tubule1 00 of 4 0.20Down
Hindgut1 00 of 4 0.20None
Heart1 00 of 4 0.14None
Fat body1 00 of 4 0.23None
Ovary1 00 of 4 0.10None
Testis1 00 of 4 0.10None
Male accessory glands4 10 of 4 0.50None
Virgin spermatheca2 00 of 4 0.32None
Mated spermatheca2 00 of 4 0.23None
Adult carcass2 00 of 4 0.30None
Larval CNS1 00 of 4 0.20None
Larval Salivary gland1 00 of 4 0.23None
Larval midgut86 24 of 410.39Up
Larval tubule8 10 of 4 1.10None
Larval hindgut5 10 of 4 0.71None
Larval fat body3 00 of 4 0.40None
Larval trachea4 20 of 4 0.52None
Larval carcass5 20 of 4 0.72None
S2 cells (growing)47 24 of 4 5.74Up
Whole fly8 20 of 4

Looking for FBgn0025383. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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