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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0025387 through 18771 annotations produced 1 hits



(CG12184):

Annotation Number : CG12184
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025387
Gbrowse : chrX:4521412-4524969 (-) // 100.0 // /// chrX:4525414-4529955 (-) // 91.56 //
Probeset : 1625734_at
Accessions : protein= NP_572174;, nucleotide= NM_131946;
FlyMine data for FBgn0025387.
VDRC has 5 RNAi stocks for FBgn0025387 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye2 ± 00 of 4 0.08Down
Thoracicoabdominal ganglion8 ± 00 of 4 0.30Down
Salivary gland15 ± 10 of 4 0.53Down
Crop7 ± 20 of 4 0.30Down
Midgut5 ± 10 of 4 0.20Down
Tubule11 ± 00 of 4 0.40Down
Hindgut4 ± 00 of 4 0.10Down
Heart3 ± 10 of 4 0.11Down
Fat body8 ± 30 of 4 0.29Down
Ovary6 ± 11 of 4 0.20Down
Testis410 ± 184 of 414.10Up
Male accessory glands10 ± 10 of 4 0.30Down
Virgin spermatheca8 ± 00 of 4 0.28Down
Mated spermatheca8 ± 10 of 4 0.30Down
Adult carcass9 ± 40 of 4 0.30Down
Larval CNS16 ± 33 of 4 0.55Down
Larval Salivary gland8 ± 10 of 4 0.29Down
Larval midgut5 ± 11 of 4 0.18Down
Larval tubule4 ± 10 of 4 0.20Down
Larval hindgut4 ± 00 of 4 0.15Down
Larval fat body54 ± 223 of 4 1.90None
Larval trachea3 ± 31 of 4 0.12Down
Larval carcass5 ± 10 of 4 0.18Down
S2 cells (growing)8 ± 00 of 4 0.30Down
Whole fly29 ± 14 of 4

Looking for FBgn0025387. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime